These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 713 fasta sequence [CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAATTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCATTAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTGTGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGTAAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG-GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT] [-] EMBL AI975281 [CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAATTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCATTAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTGTGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGTACACATAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGTCATTCATTTCATGCGACATATAA AGAGAAGAAAAGAAGAAATATATCAAACGAAAGCTAGTTAGCTATTAAATGCGCTCGACATATAGGCAGCAGAATAGGACCAAGGGAACGGTTATTATTCATGACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGACGGTGACAGTGGCTACAACGGATGTGAGGATTGTGTTGACTACCA ] [+] EMBL CD168981 [ GCATTAACTACTTATTAATAGTCATCTGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTGTGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGTAAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT] [-] EMBL CD145416 [ AAGTGTTGAAAATCTAAAATACGAAAAAGGTAAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAAT ] [+] EMBL CD075418 [ CATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAAATTTTATTTTGTTAAGATGATTGCAACATAGAAC ] consensusID : consensus_8911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 400 fasta sequence [ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAA-CAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGA-AGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAGATTTTATTTTGTTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG] [-] EMBL CD081594 [ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAA CAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGA AGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAGATTTTATTTTGTTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG] [+] EMBL CD197030 [ GAAGAAATATATCAAATCAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGGATACGACCAAGGGAACGGTTATTATTCATTACATTTAGATAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTTATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGA ] [-] EMBL CD193551 [ ATACGACCAAGGGAACGGTTATTATTCATTACATTTAGA AGAGATGATATGGATAAGGTATCAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8911#0 CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAA 60 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCAT 120 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTG 180 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGT 240 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 AAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCAC 300 consensus_8911#1 ------------------------------------------------------------ consensus_8911#0 TTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAA 360 consensus_8911#1 --------------ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAA 46 ********************************************** consensus_8911#0 AGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGG 420 consensus_8911#1 AGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGG 106 ************************************************************ consensus_8911#0 TTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAG 480 consensus_8911#1 TTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAG 166 ************************************************************ consensus_8911#0 TGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTAT 540 consensus_8911#1 TGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTAT 226 ************************************************************ consensus_8911#0 AATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGT 600 consensus_8911#1 AATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGT 286 ************************************************************ consensus_8911#0 TATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGA 660 consensus_8911#1 TATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGA 346 ************************************************************ consensus_8911#0 GAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT- 713 consensus_8911#1 GAGATTTTATTTTGTTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG 400 ** *************** ******************* **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||