These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 947 fasta sequence [CGACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACA-ATTTCTACAACAAAATGGTATGAGAAAAAC-AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA-----CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC-AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA-TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTAATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATAAATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATTATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATCANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT] [-] EMBL CD159852 [ GACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACA ATTTCTACAACAAAATGGTATGAGAAAAAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC ] [+] EMBL CD171422 [caACAACAACTACTACTACAAAATAACATAAACAAAATGGTTATGTTAAACATATTTCTACAACAAAATGGTATGAGAAAAACAAAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAAGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAACAAATATCACT CATTGTATCATTACATTTTCGAGAGGCTAAANTG TTTATCATCGTTTATGACGTAACAGATATGG ATCATTTGAAC AATACGTAAATATg ] [-] EMBL CD159896 [ AACA ATTTGTACAACAAAATGGTATGAGAAAAAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGGATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC ] [-] EMBL CD159930 [ AAAATGGTTTGAGAAAAAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATCAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC ] [-] EMBL CD159855 [ AAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTAATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC ] [+] EMBL CD079590 [ CAANAATTTG GCACGAGGCTCGTTGGTGAAACATTTTAT AGACTACTATTT AACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTAATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATAAATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATTATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATCANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT] [+] EMBL CD186857 [ ATAT GAATCATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTAATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATAAATTACGATGTTGTTTGACACATTAACTAACACGT ] consensusID : consensus_8918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAATATAAGCAGTCAGACCGGCGAGTTGTAGTGGTTCCCGATTGTCAATTCAAGGCAGTAAGACTGCGAACTCAACAGAGTCAATACGTACATAACAGATCCTACAATTGAGATATAAAAACTGAC] [+] EMBL CD202319 [CATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAATATAAGCAGTCAGACCGGCGAGTTGTAGTGGTTCCCGATTGTCAATTCAAGGCAGTAAGACTGCGAACTCAACAGAGTCAATACGTACATAACAGATCCTACAATTGAGATATAAAAACTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8918#0 CGACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACAATTTCTAC 60 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 AACAAAATGGTATGAGAAAAACAAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTG 120 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 GTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATT 180 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 CTGGTGTAGGAAAAACATCAATAATTAGAGCACTTGTTGGTGAAACATTTTATCAGACTA 240 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 CTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTG 300 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 TACAATTAGAAGTATGGGATACAGCAGGTCAAGAACAATATCACTCCATTGTATCATTAC 360 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 ATTTTCGAGAGGCTAAATGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTG 420 consensus_8918#1 ------------------------------------------------------CATTTG 6 ****** consensus_8918#0 AACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGG 480 consensus_8918#1 AACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGG 66 ************************************************************ consensus_8918#0 TGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAG 540 consensus_8918#1 TGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAG 126 ************************************************************ consensus_8918#0 GTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCG 600 consensus_8918#1 GTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCG 186 ************************************************************ consensus_8918#0 GTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTG 660 consensus_8918#1 GTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTG 246 ************************************************************ consensus_8918#0 CTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTA 720 consensus_8918#1 CTCCAAAATATAAGCA----GTCAGACCGGCGAGTTGTAGTGGTTC---CCGATTGTC-A 298 ******** * * * * * * * ** ** * ** * ** *** * consensus_8918#0 ATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATA 780 consensus_8918#1 ATTCAAGGCAGTAAGACTGCGAA-------CTCAACAGAGTC---AATACGTACATAACA 348 **** * * * * * **** ** ** * * ***** * consensus_8918#0 AATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATT 840 consensus_8918#1 GATCCTACAATTGA--GATATAAAAACTGAC----------------------------- 377 ** *** ** * * **** ** consensus_8918#0 ATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATC 900 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 ANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT 947 consensus_8918#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||