These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAAGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAAGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATTATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATGCCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGGAAGATGAGATATCGGTTTTTGACATGTTCTACTTAATACATAT] [+] EMBL CD069715 [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAAGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAAGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATTATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATGCCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGGAAGATGAGATATCGGTTTTTGACATGTTCTACTTAATACATAT] [+] EMBL CD069720 [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAAGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAAGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATTATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATGCCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGGAAGATGAGATATTGGTTTTTGACATGTTCTACTTAA ] consensusID : consensus_8923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 460 fasta sequence [ATGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAAAAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATTTTAAGTAATCTGTTCACAGTGATGTAAACTGAAATTTCAT] [+] EMBL CD069732 [ATGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAACTAGATAAAAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATTTTAAGTAATCTGTTCACAGTGATGTAAACTGAAATTTCAT] [+] EMBL CD069747 [ TGAGAAATATACAACTGATAGATAATGATGATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGGAGATTTGTAATAATAGTGTCACTAATTTCAATAATCCGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAACAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACAT ] [+] EMBL CD069729 [ TGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAAAAATGTGTCACAGTGGGAATGAGGAGTTTCTTTA ] [+] EMBL CD134424 [ ACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTT ] consensusID : consensus_8923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 457 fasta sequence [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG] [+] EMBL CD069773 [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG] [+] EMBL CD069780 [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8923#1 ------------------------------------------------------------ consensus_8923#2 TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGG 60 consensus_8923#0 ------------------------------------------------------------ consensus_8923#1 ------------------------ATGAGAAATATACA---ACTGATAGATAATGATAAT 33 consensus_8923#2 GGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTAC---ACAAAAAGA-ACCGAAATC 116 consensus_8923#0 TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGG 60 ** * * * *** * ** consensus_8923#1 CACACACAA-AAAGAAACAATGAAAAAAAAGAGTGATAGACAAAA----CAGAATTCATT 88 consensus_8923#2 AACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAA----CAGAATTCATT 172 consensus_8923#0 GGGAGGGAG-AGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAAC 119 * * * ** * * * ** ** * ** ****** * *** *** consensus_8923#1 TCGCAA-ATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATT 147 consensus_8923#2 TCGCAA-ATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATT 231 consensus_8923#0 AGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAA 179 **** * ** * ***** * ** * * * **** * ** ** consensus_8923#1 AGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATT 207 consensus_8923#2 AGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATT 291 consensus_8923#0 AGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACA 239 ** ** * *** * ***** * *** **** **** * * ** consensus_8923#1 TCAATAATCTGTGAAATGTAGTAT--GAAAGAGTTAATAATGTCATTAATCTTTCATTGA 265 consensus_8923#2 TCAATAATCTGTGAAATGTAGTAT--GAAAGAGTTAATAATGTCATTAATCTTTCATTGA 349 consensus_8923#0 AGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTAT 299 ***** * * *** * * * * * * * * * *** ** **** consensus_8923#1 -ATTGAAAGAGAATTT-CAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGAT 323 consensus_8923#2 -ATTGAAAGAGAATTT-CAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGAT 407 consensus_8923#0 TATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGAT 359 *** * * ** * * * ** **** * ** * * ** **** consensus_8923#1 GCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAAAAATGTGTCACAGTT 383 consensus_8923#2 GCCACTTTTATTAAACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG---------- 457 consensus_8923#0 GCCA--TTTAACAAGACGATCTACACT--TACACTAACTAAATCAAA-TGAATCTGATTT 414 **** **** ** * * *** * ** * *** ** *** ** consensus_8923#1 GGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATTTTAAGTAATCTGTTCACAGTGAT 443 consensus_8923#2 ------------------------------------------------------------ consensus_8923#0 TAAAGGAAGATGAGATATCGGTTTTTGACAT---GTTCTACTTAATACATAT-------- 463 consensus_8923#1 GTAAACTGAAATTTCAT 460 consensus_8923#2 ----------------- consensus_8923#0 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||