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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 972 fasta sequence
[AAATAAATTTATTCACAACCCAATGAGTAATAATTATCAAATTAATATTTATCCCATTATTTCGTTTTCTTTAAAGATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGATGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCTAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAACCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGCTTGAAATAATTGGTGAAAATTTCAGTCCTAGGCATCAAGTATGGTTTGGTGACGTTCCAGCCCAGACATTTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAGATTGGACATATATTCAGAAAACTTTAGAGGTGCCAATTAGTTAGTGCGACAAGATGGTATTATCTATGCGAGTGGTTTAACATTTACTTACCATCCAGAATCTGGACCAAGACAACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTGATAATAATCATAATAATTCA]
[+] EMBL CD076458 [AAATAAATTTATTCACAACCCAATGAGTAATAATTATCAAATTAATATTTATCCCATTATTTCGTTTTCTTTAAAGATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGATGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCTAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAACCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGCTTGAAATAATTGGTGAAAATTTCAGTCCTAGGCATCAAGTATGGTTTGGTGACGTTCCAGCCCAGACATTTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAGATTGGA ]
[-] EMBL CD069669 [ CAAGTATGTTTTGGTGACGTTCCAGCCCAGACATTTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAGATTGGACATATATTCAGAAAACTTTAGAGGTGCCAATTAGTTAGTGCGACAAGATGGTATTATCTATGCGAGTGGTTTAACATTTACTTACCATCCAGAATCTGGACCAAGACAACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTGATAATAATCATAATAATTCA]
consensusID : consensus_8924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 817 fasta sequence
[GCCCAGAATCGCACGAGGCTTACCATCCAGAATCTGGACCAAGACACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTAATAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCTTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTAAATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAGATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTTATATCTTAAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAATACTGTAGACAAACGTTTATTCACACATTTATCCGATCCTACTC]
[+] EMBL CD083387 [GCCCAGAATCGCACGAGGCTTACCATCCAGAATCTGGACCAAGACACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTGATAATAATCATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCT ]
[+] EMBL CD146909 [ AATAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCTTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTAAATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAGATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTTATATCTTAAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAATACTGTAGACAAACGTTTATTCACACATTTATCCGATCCTACTC]
[+] EMBL CD146938 [ AATAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCTTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTAAATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAGATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTTATATCTTAAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAAT ]
consensusID : consensus_8924#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 485 fasta sequence
[GCTGAACAGTTCACTGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCACTTCCTCGTTTAATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGACGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCCAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAATCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGGTTGAAATAAT]
[+] EMBL CD069724 [GCTGAACAGTTCACTGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCAg ]
[+] EMBL CD069706 [ TGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCACTTCCTCGTTTAATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGACGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCCAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAATCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGGTTGAAATAAT]
[+] EMBL CD069703 [ TGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCACTTCCTCGTTTAATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGATGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCTAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAATCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTAACAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGCTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8924#0 ------------------------AAATAAATT--TATTCACAACCCAATGAGTAATAAT 34
consensus_8924#2 -------GCTGAACA--GTTCACTGTACAAGAC--GGTTATATACACTATG-GTCATA-C 47
consensus_8924#1 GCCCAGAATCGCACGAGGCTTACCATCCAGAATCTGGACCAAGACACATTGTCAACCAGC 60
* ** * ** *
consensus_8924#0 TATCAAATTAATATTT----ATC------CCATTATTTCGTTTTCTTTAAAGATTGTAAG 84
consensus_8924#2 AGTGAAATTGGTCTGTTCAGAAA------CTGGTATGGCACTTCCTCGTTTAATTGTAAG 101
consensus_8924#1 ACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTC 120
* ** * * * * * * * * **
consensus_8924#0 GAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGT-TAGTCAACTTCATA 143
consensus_8924#2 GAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGT-TAGTCAACTTCATA 160
consensus_8924#1 TGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATG 180
** * * *** * * * * * * ** ** * * * * ******
consensus_8924#0 AATGTGCATTTCAT---TTAAAAGAT-------ACGGATAGAATGTATTTATGTCTTTCA 193
consensus_8924#2 AATGTGCATTTCAT---TTAAAAGAT-------ACGGATAGAATGTATTTATGTCTTTCA 210
consensus_8924#1 TTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGT--TGTA 238
* * *** ** * ** * ** ******* * **** * *
consensus_8924#0 CAAGATAAAATTGTTCAATTGCCATCTACACCA-TGTGATGAAAATCC--TTTGCGTGAG 250
consensus_8924#2 CAAGATAAAATTGTTCAATTGCCATCTACACCA-TGTGATGAAAATCC--TTTGCGTGAG 267
consensus_8924#1 CCACA-ACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTAA 297
* * * * *** * * * * ** ** ** * ** ** ** * * *** * *
consensus_8924#0 AAAATAAATGATGCCGCAGCATGGACTATTATTAGTA-CAGATAGAGCGGAATATCGTTG 309
consensus_8924#2 AAAATAAATGACGCCGCAGCATGGACTATTATTAGTA-CAGATAGAGCGGAATATCGTTG 326
consensus_8924#1 TAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATT 357
** * * * * * ** * *** * * ** ** * * * *** *
consensus_8924#0 GTTTGAACCTAGTCATTTACCAAGTA-----CATACAGAACAAAAGATGGACAAATTA-- 362
consensus_8924#2 GTTTGAACCCAGTCATTTACCAAGTA-----CATACAGAACAAAAGATGGACAAATTA-- 379
consensus_8924#1 AAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACA 417
* * * * ** * *** ** *** *** * * ** *
consensus_8924#0 -AACCAATCACACCTCCTCCACCATG----TC--TGACACCAGTTACACCTGTACCA--A 413
consensus_8924#2 -AATCAATCACACCTCCTCCACCATG----TC--TGACACCAGTTACACCTGTACCA--A 430
consensus_8924#1 TAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCA 477
** * ** ** * * ** ** * ** * *** **** *** * * ** *
consensus_8924#0 TTGTACGA--GATATGCGAGTGAATGGTGGT----GGAGATGTTGCAATGCTTGAAATAA 467
consensus_8924#2 TTGTACGA--GATATGCGAGTGAATGGTGGT----GGAGATGTTGCAATGGTTGAAATAA 484
consensus_8924#1 TTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTC 537
** * * ** * * * ** * * *** * *** ** ***
consensus_8924#0 TTGGTGAAAATTTCAGTCCTAGGCATCAAGTATGGTTTGGTGACGTTCCAGCCCAGACAT 527
consensus_8924#2 T----------------------------------------------------------- 485
consensus_8924#1 TTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTA 597
*
consensus_8924#0 TTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAG 587
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 AATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAG 657
consensus_8924#0 ATTGGACATATATTCAGAAAACTTTAGAGGTGCCAATTAGTTAGTGCGACAAGATGGTAT 647
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 ATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTT-ATATCTT 716
consensus_8924#0 TATCTATGCGAGTGGTTTAACATTTACTTACCATCCAGAATCTGGACCAAGACAACATTG 707
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 AAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAATAC 776
consensus_8924#0 TCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGC 767
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 TGTAGACAAACGTTTATTCACACATTTATCCGATCCTACTC------------------- 817
consensus_8924#0 AGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGA 827
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 ------------------------------------------------------------
consensus_8924#0 ACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAA 887
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 ------------------------------------------------------------
consensus_8924#0 TGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTG 947
consensus_8924#2 ------------------------------------------------------------
consensus_8924#1 ------------------------------------------------------------
consensus_8924#0 CCTTGATAATAATCATAATAATTCA 972
consensus_8924#2 -------------------------
consensus_8924#1 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||