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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1241 fasta sequence
[ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG-AACACCTAAACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGGTAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAACAGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAAAAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCTTGGACAGTTGTTGAACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTCGGATGATCGTTGGCAACTTATTGCAAATGTTGTCGGTACTCGTACTCGA-CGTGAATGCATAATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGGCGCAAGAAATGCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATAAAAAAAAAAAAAAAA]
[+] EMBL CD069665 [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTT ]
[+] EMBL CD069660 [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG AACACCT ]
[+] EMBL CD069662 [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTCGGTTAAAGCAGTTAATATTCTTCCAGCTGGAAACAC ]
[+] EMBL CD162407 [ GTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGAAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAACGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG AACACCTAAACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGGTAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAACAGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAAAAACGTGANCATCACAACTCAATTAGAAGCTGAA ]
[+] EMBL CD157003 [ ATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG AACACCTAAACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGGTAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAACAGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAAAAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCTTGGACAGTTGTTGAACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTCGGATGATCGTTGGCAACTTAT ]
[-] EMBL CD119224 [ GATGCTGTCAAAAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCCTGGACAGTTGTTGAACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTCGGATGATCGTTGGCAACTTATTGCAAATGTTGTCGGTACTCGTACTCGA CGTGAATGCATAATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGGCGCAAGAAATGCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATA ]
[-] EMBL AI395248 [ ACTCGGACT GAGCGTGAATGCATAATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGNC CAAGAAAT CGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATAAAAAAAAAAAAAAAA]
consensusID : consensus_8925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[TCGTACTCGTACTCGACGTGAATGCATAATACGTGTAAAAGAGTTAGCAGAACAGGNTCGCGCTAAAAAGGCTGCTTTGCTTGCGGCCAAGAAATCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATACACTTGTCTTTTGTATTAAATATTTAGCTTTTTGAGCTTTTATTGCACCATTCGTGCTCTGTGTATAACTGTTTAGTAGAAATACTACACGTGAAAATATAAAAGAGGCAACTGTTTATTAAAAAAAAAAAAAAAAA]
[-] EMBL AI395817 [TCGTACTCGTACTCGACGTGAATGCATAATACGTGTAAAAGAGTTAGCAGAACAGGNTCGCGCTAAAAAGGCTGCTTTGCTTGCGGCCAAGAAATCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATACACTTGTCTTTTGTATTAAATATTTAGCTTTTTGAGCTTTTATTGCACCATTCGTGCTCTGTGTATAACTGTTTAGTAGAAATACTACACGTGAAAATATAAAAGAGGCAACTGTTTATTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8925#0 ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGA 60
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 ACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGT 120
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 CGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCA 180
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 TCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATT 240
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 GCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTT 300
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 CTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAAC 360
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 TAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGAC 420
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 AACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGGAACACCTAA 480
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 ACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGG 540
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 TAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAAC 600
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 AGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAA 660
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 AAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCTTGGACAGTTGTTGA 720
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 ACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTC 780
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 GGATGATCGTTGGCAACTTATTGCAAATGTTGTCGGTACTCGTACTCGACGTGAATGCAT 840
consensus_8925#1 ---------------------------------TCGTACTCGTACTCGACGTGAATGCAT 27
*************************
consensus_8925#0 AATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGGC 900
consensus_8925#1 AATACGTGTAAAAGAGTTAGCAGAACAGGNTCGCGCTAAAAAGGCTGCTTTGCTTGCGGC 87
****** ******************* ********************** ******
consensus_8925#0 GCAAGAAATGCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAA 960
consensus_8925#1 -CAAGAAAT-CGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAA 145
******** **************************************************
consensus_8925#0 AAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTA 1020
consensus_8925#1 AAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTA 205
************************************************************
consensus_8925#0 CATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCA 1080
consensus_8925#1 CATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCA 265
************************************************************
consensus_8925#0 ACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCT 1140
consensus_8925#1 ACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCT 325
************************************************************
consensus_8925#0 TTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGT 1200
consensus_8925#1 TTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGT 385
************************************************************
consensus_8925#0 CTTAAAATGTTAACTATTCCTTGATAAAAAAAAAAAAAAAA------------------- 1241
consensus_8925#1 CTTAAAATGTTAACTATTCCTTGATACACTTGTCTTTTGTATTAAATATTTAGCTTTTTG 445
************************** * *
consensus_8925#0 ------------------------------------------------------------
consensus_8925#1 AGCTTTTATTGCACCATTCGTGCTCTGTGTATAACTGTTTAGTAGAAATACTACACGTGA 505
consensus_8925#0 -------------------------------------------
consensus_8925#1 AAATATAAAAGAGGCAACTGTTTATTAAAAAAAAAAAAAAAAA 548
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||