These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1227 fasta sequence [CTCCAGGCCAAAAATTCGGCACGAGGAGTATTGTTACCACCAATCGACATGAAATATAGGATTCTAACAACAAACAGATTATTTGGTACAAACTAGTTCATTTCTAGTAGTCGATAGTGAAATTACTAAGTAAGCTAAGGAAGTAGATATTTGAGGAAAAACTGAACAGAAGGAAAACAAAACAATAACAAAAAAAATGACTGTGAAAGCACATTAAGTAATAGTCTATCACAGCTGTTATTATCACAAAGAAATACAGAATCGTTATAATCAGACAATAGATGAGCTAAAACCAAATACACGTTATTTATGCTATTATATGCAAAATGGTTCGAATATAAGAATACGAAACAGTTCGTAAACACTTATTTCATTTTAAACTGAATTAGTTTTGCCTTTGTTATAGTTGCAAGTGACAGGGTCTTTATTCACCATGTAAACACACATGTACGGTAGTGAAGGTCATTCTGAAACACAAAAACGTTATTCATTGTATAACAGGAGCTTTAGTATGTCCTAAAACACTTTCTTGAATCCGTATTGACTTTTCTAGTGATGAA-GGGTTTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGACAGTACTGGAGAACACGTTCAGTCAACTCAAGTACATCCTCTAGAGCT-GGTGGTGTTACTATGGGTTCAGCTTTTATAGGAATATAAAATAGGCTGTGGACTCTCTCTTGTTTAGGTATTAAATTATCTTTACTTTCTTGTTCTTGCACTTCTTCATCATCATTATCAGAAGAAGAGGAATTATATAATTCTTCCTGTAGAATGCAAACCTCTTCCTCTTCGTTATCGCTAGTTACAAAGAAACGATGTTGTTCTTCATCCATTGGGGAAGGATCAGTATCTACGATATTAGATGAGAGTGGTTTTATTCCACCTTTGCTTTCTAGTATATACTGTTTTTCTATAGTTTCTTTAGCTTTCAAAATCTCCCCAACCTTAGGCCATTGGTATTTTAACGTTCCACTACTTCCTTTTACTTGCATTTTAGATTTGGCTTCCTGAAGACCGTATTCAAGTGCTCTTGTCCACTTTGTTGGTTCCACTGTCTGGTGACCAGTATTTTGTTTGGTATTTGTTGGTAATATAGATTTGTTTCTAACATCTTTGATCAGAAGGCGTAATATGTTTATAGGATTGGCAAATGGAGCGATTTGCATAAGTCGAGGTA] [+] EMBL CD080198 [CTCCAGGCCAAAAATTCGGCACGAGGAGTATTGTTACCACCAATCGACATGAAATATAGGATTCTAACAACAAACAGATTATTTGGTACAAACTAGTTCATTTCTAGTAGTCGATAGTGAAATTACTAAGTAAGCTAAGGAAGTAGATATTTGAGGAAAAACTGAACAGAAGGAAAACAAAACAATAACAAAAAAAATGACTGTGAAAGCACATTAAGTAATAGTCTATCACAGCTGTTATTATCACAAAGAAATACAGAATCGTTATAATCAGACAATAGATGAGCTAAAACCAAATACACGTTATTTATGCTATTATATGCAAAATGGTTCGAATATAAGAATACGAAACAGTTCGTAAACACTTATTTCATTTTAAACTGAATTAGTTTTGCCTTTGTTATAGTTGCAAGTGACAGGGTCTTTATTCACCATGTAAACACACATGTACGGTAGTGAAGGTCATTCTGAAACACAAAAACGTTATTCATTGTATAACAGGAGCTTTAGTATGTCCTAAAACACTTTCTTGAATCCGTATTGACTTTTCTAGTGATGAAGGGGTTTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGACAGTACTGGAGAACACGTTCAGTCAACTCAAGTACATCCTCTAGAGCTGGGTGGTGTTACTATGGGTTCAGCTTTTATAGGAATATAAA ] [-] EMBL AI977489 [ TATGCTATTATATGCAAAATGGTTCGAATATAAGAATACGAATCAGTTCGTAAACACTTATTTCATTTTAAACTGAATTAGTTTTGCCTTTGTTATAGTTGCAAGTGACAGGGTCTTTATTCACCATGTAAACACACATGTACGGTAGTGAAGGTCATTCTGAAACACAAAAACGTTATTCATTGTATAACAGGAGCTTTAGTATGTCCTAAAACACTTTCTTGAATCCGTATTGACTTTTCTAGTGATGAA GGGTTTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGACAGTACTGGAGAACACGTTCAGTCAACTCAAGTACATCCTCTAGAGCT GGTGGTGTTACTATGGGTTCAGCTTTTATAGGAATATAAAATAGGCTGTGGACTCTCTCTTGTTTA ] [-] EMBL CD141598 [ CAAGTGACAGGGTCTTTATTCACCATGTAAACACACATGTACGGTAGTGAAGGTCATTCTGAAACACAAAAACGTTATTCATTGTATAACAGGAGCTATAGTATGTCCTAAAACACTTTCTTGAATCCGTATTGACTTTTCTAGTGATGAA GGGTGTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGGCAGTACTGGAGAACACGTTCAGTCAACTCAA ] [-] EMBL CD156804 [ acganTATTCATTGTATAACAGGAGCTNTAGTATGTCCTAAAACACTTTCTTGAATCCGTATTGACTTTTCTAGTGATGAA GGGTTTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGACAGTACTGGAGAACACGTTCAGTCAACTCAAGTACATCCTCTAGAGCT GGTGGTGTTACTATGGGTTCAGCTTTTATAGGAATATAAAATAGGCTGTGGACTCTCTCTTGTTTAGGTATTAAATTATCTTTACTTTCTTGTTCTTGCACTTCTTCATCATCATTATCAGAAGAAGAGGAATTATATAATTCTTCCTGTAGAATGCAAACCTCTTCCTCTTCGTTATCGCTAGTTACAAAGAAACGATGTTGTTCTTCATCCATTGGGGAAGGATCAGTATCTACGATATTAGATGAGAGTGGTTTTATTCCACCTTTGCTTTCTAGTATATACTGTTTTTCTATAGTTTCTTTAGCTTTCAAAATCTCCCCAACCTTAGGCCATTGGTATTTTAACGTTCCACTACTTCCTTTTACTTGCATTTTAGATTTGGCTT ] [-] EMBL CD156772 [ ATAACAGGAGCTNTAGTATGTCCTANAACACTTTCTTGAATCCGTATTGACTTTTCTAGTGATGAA GGGTTTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGACAGTACTGGAGAACACGTTCAGTCAACTCAAGTACATCCTCTAGAGCT GGTGGTGTTACTATGGGTTCAGCTTTTATAGGAATATAAAATAGGCTGTGGACTCTCTCTTGTTTAGGTATTAAATTATCTTTACTTTCTTGTTCTTGCACTTCTTCATCATCATTATCAGAAGAAGAGGAATTATATAATTCTTCCTGTAGAATGCAAACCTCTTCCTCTTCGTTATCGCTAGTTACAAAGAAACGATGTTGTTCTTCATCCATTGGGGAAGGATCAGTATCTACGATATTAGATGAGAGTGGTTTTATTCCACCTTTGCTTTCTAGTATATACTGTTTTTCTATAGTTTCTTTAGCTTTCAAAATCTCCCCAACCTTAGGCCATTGGTATTTTAACGTTCCACTACTTCCTTTTACTTGCATTTTAGATTTGGCTT ] [+] EMBL CD136588 [ TTCTAGTGATGAA GGGTTTGGTGAATCAAAATCTGACAAAATCTGACGTACAGCTGTTACAGTACCTGGTCGACAGTACTGGAGAACACGTTCAGTCAACTCAAGTACATCCTCTAGAGCT GGTGGTGTTACTATGGGTTCAGCTTTTATAGGAATATAAAATAGGCTGTGGACTCTCTCTTGTTTAGGTATTAAATTATCTTTACTTTCTTGTTCTTGCACTTCTTCATCATCATTATCAGAAGAAGAGGAATTATATAATTCTTCCTGTAGAATGNCAACCTCTTCCTCTTCGTTATCGCTAGTTACAAAGAAACGATGTTGTTCTTCATCCATTGNGGCAGGATCAGTATCTACGATATTAGATGAGAGT ] [+] EMBL CD098146 [ AACCTCTTCCTCTTCGTTATCGCTAGTTACAAAGAAACGATGTTGTTCTTCATCCATTGGGGAAGGATCAGTATCTACGATATTAGATGAGAGTGGTTTTATTCCACCTTTGCTTTCTAGTATATACTGTTTTTCTATAGTTTCTTTAGCTTTCAAAATCTCCCCAACCTTAGGCCATTGGTATTTTAACGTTCCACTACTTCCTTTTACTTGCATTTTAGATTTGGCTTCCTGAAGACCGTATTCAAGTGCTCTTGTCCACTTTGTTGGTTCCACTGTCTGGTGACCAGTATTTTGTTTGGTATTTGTTGGTAATATAGATTTGTTTCTAACATCTTTGATCAGAAGGCGTAATATGTTTATAGGATTGGCAAATGGAGCGATTTGCATAAGTCGAGGTA] [-] EMBL CD193925 [ GATGAGAGTGGTTTTATTCCACCCTTGCTTTCTAGTATATACTGTTTTTCTATAGGTTCTTTAGCTTTCAAAATCTCCCCAACCTTAGGCCATTGGTATTTTAACGTTCCACTACTTCCTTTTACTTGCATTTTAGATTTGGCTTCCTGA ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||