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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 797 fasta sequence
[ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG-GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG-ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA-CTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAACAATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAACGTTGGACATCAACACT]
[+] EMBL CD092226 [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAACAACATTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACC AGTATTAAACTATAAATCAT ]
[+] EMBL CD092187 [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATAAA ]
[+] EMBL CD092215 [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTG AAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATta ]
[-] EMBL CD092166 [ CCGAACTCCTANAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAACAATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAACGTTGGACATCAACACT]
[-] EMBL CD092192 [ CCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAGAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAA TTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACTTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCGCGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTGTATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGATATTCATAGAGAGCCAAGTA TAAACTATGAATCATGGATTGTTGCGGAGCTAGCAATATTACCAATTTTATAGCAAGAAACTGTGATCAGTGAGGATAATCCTTATAGTATAAGATTCAGTTACCCACCATAGACAATTGAAGATGATCAAGCAGTGTATCGTGGCTTGATTAACGTTGGACATTAACAtt]
consensusID : consensus_8946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence
[ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATGATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATATGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGTGAATATCATTCTT]
[+] EMBL CD152966 [ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATGATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATATGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAAT ]
[+] EMBL CD153023 [ATGGTAATTCAAATTTGACAGCTTCACTTGTACATAATAATATTGATGGTGATGATGATGACGATGATGAACACAACGACGAACACAATGAAGATGCTAATGCACAGCCCAGAGTTGCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCACTCGTATCAATATGAATCGATCATTGCTAGATTGGCGCTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACACACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGAGGTTATCATGTTCAACATCAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAGTACACATAAACTATCAGATTCTGTATATC ]
[+] EMBL CD117946 [ AACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATAAATGGTATATTGTTGAATATGAATTATCATTC TTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGTGAATATCATTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8946#0 ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGA 60
consensus_8946#1 -------------ATGGTAATTCAAATTTGACAGCT-TCACTTGTAGATAATAATATTGA 46
* * ** * *** * *** ** ** * *** *****
consensus_8946#0 TAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTA 120
consensus_8946#1 TGGTGAT-GATGATGATGATGTTGAAGACAACG----ACGAT--GACAATGAAGATGCTA 99
* **** *** ** * ** ** ** ** * * * **
consensus_8946#0 TTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGG 180
consensus_8946#1 ATGCACAGCCCAAAGTTTC---AGTTGTTCATAATG--CATTGAACTTTTTCAATAGATC 154
** ** * * ** * * ** ** * ** *
consensus_8946#0 AGGAACGGTTTTCCGAACTCCTAA-AATATCGATGGATAACTATTATGTAACCATTGATC 239
consensus_8946#1 TACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCT 214
* *** *** * ** ** ***** ** *** * * *** * * **
consensus_8946#0 ATGTGAAAGTACTACTTGAATTCAAACT--ACCAAGAAGAAGAAAATCAGCTCATGGGAT 297
consensus_8946#1 TATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAA 274
* **** ** ** ** **** ** ** * ***** ** ** * *
consensus_8946#0 TGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAA 357
consensus_8946#1 TTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAA 334
* ** * **** * * * * * * * ***** * **
consensus_8946#0 TCAATCAT-TTCAATTGTACCTAGTGAGTGAATAATCAAATGA-CGCAGTACAGATTTGT 415
consensus_8946#1 TTACTATTATCCTATTCCACC-ACCATATCAACCACAAAGTGAACGTATTTCA----CGT 389
* * * * * * *** *** * * ** * ** *** ** * * ** **
consensus_8946#0 GTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAG 475
consensus_8946#1 GTTTCATGGTCTAAA--TCATCATGTATAGGAATGAAT-AATAATACTGATTCAACATAT 446
** * * * ***** * * * **** **** ** * * * ** * ** *
consensus_8946#0 GA-CAGCATATTGACGCGGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAA 534
consensus_8946#1 AATCAATCTACTGATAATATC-CCATTTACTAATACACATAAACTATCAGATTCTGTATA 505
* ** ** *** *** * * * **** * *** *
consensus_8946#0 TTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTGATGAAAACGAAGTGAAAAGTATGTG 594
consensus_8946#1 TCTTAC-AAATCCAA---TANATGGTAT---ATTGTTGAATATGAATT----ATCATTCT 554
* ** **** *** ** * * **** **** * *** * * **
consensus_8946#0 CTCTATTGGTGACTTCATAGAGAACCA-AGTATTAAACTATAAATCATGGATTGTTACGA 653
consensus_8946#1 TTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACA 614
* * * * ** * * * *** * * * ** *** * * * * *
consensus_8946#0 AGCTAACAATACTACCAATT---TTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTT 710
consensus_8946#1 GGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACC-GTGAATATCATTCTT 673
* ** *** ** * *** * * * * * * *** * **** ** ** ***
consensus_8946#0 ATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTG 770
consensus_8946#1 ------------------------------------------------------------
consensus_8946#0 GCTTGATTAACGTTGGACATCAACACT 797
consensus_8946#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||