These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [GGCCANAATTTGGCACGAGGTATCGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAACGTTCAGCTAGTCGTAAACGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATGGATACCACAAAGTGGTGAACAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTCTCTAACGAATCGTGATGAACGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTTACGAGATTTTACTGTACCAAAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATATTACATCTAATAATATTGTCTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATCGGAATCATGATGATGATGATGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACCATGGATATAATGANTATAACGATAATAATGTTGATAAACATGTAACCAATC] [+] EMBL CD080844 [GGCCANAATTTGGCACGAGGTATCGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAACGTTCAGCTAGTCGTAAACGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATGGATACCACAAAGTGGTGAACAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTCTCTAACGAATCGTGATGAACGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTTACGAGATTTTACTGTACCAAAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATATTACATCTAATAATATTGTCTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATCGGAATCATGATGATGATGATGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACCATGGATATAATGANTATAACGATAATAATGTTGATAAACATGTAACCAATC] consensusID : consensus_8947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence [GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAAAAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAGTGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAAGCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAG-TTCAATGAATACTTTATGGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAAC] [+] EMBL CD168755 [GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAAAAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAGTGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAAGCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAG TTCAATGAATACTTTATGGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTAT ] [-] EMBL CD193617 [ cTAACTGGTACNCATCCATCAAAACATCG TCCAGTTTCAATGAATACTTTATGGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAAC] consensusID : consensus_8947#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 317 fasta sequence [AGAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT] [+] EMBL CD120237 [AGAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCGATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGGTGATTAATTGTATCACCCAATCTAGGA ] [-] EMBL CD120372 [ GAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT] [-] EMBL CD120428 [ GAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT] [-] EMBL CD120425 [ GAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGTTGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT] consensusID : consensus_8947#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [GATGGTACAGGATGATCACCGAACCATAAAGTATTCATTGAACTGGAACGATGTTTTGATGGATGGGTACCAGTTAAACCGCTTAGTGTTCGACGTTTTGTACTGATTATTAAACTGTGTTTTGAACCATTAATACCGTAATAACCAGAACTTCGACTTGTTGCAGTT] [+] EMBL CD191715 [GATGGTACAGGATGATCACCGAACCATAAAGTATTCATTGAACTGGAACGATGTTTTGATGGATGGGTACCAGTTAAACCGCTTAGTGTTCGACGTTTTGTACTGATTATTAAACTGTGTTTTGAACCATTAATACCGTAATAACCAGAACTTCGACTTGTTGCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8947#0 ------------------------------------------------------------ consensus_8947#1 GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAA 60 consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 ------------------------------------------------------------ consensus_8947#1 AAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAG 120 consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 ------------------------------------------------------------ consensus_8947#1 TGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAA 180 consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 --------------------------------GGCCANAATTTGGC--ACGAGGTATCGT 26 consensus_8947#1 GCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAGTTCAATGAATACTTTATGGT 240 consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 -----------------------AGAAGGAATTGACATACCTTCAGGACTGATAAGACTA 37 consensus_8947#0 TCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTAT 86 consensus_8947#1 TCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTAT 300 consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 TCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGT 97 consensus_8947#0 CAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATG 146 consensus_8947#1 CAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATG 360 consensus_8947#3 --------------------------------GATGGTACAGGATGATCACCGAACCATA 28 consensus_8947#2 ACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTA 157 * * * consensus_8947#0 GA-CATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGA-AAGTCATTTA-- 202 consensus_8947#1 GA-CATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGA-AAGTCATTTA-- 416 consensus_8947#3 AAGTATTCATTGAACTGGAACGATGTTT-TGATGGATGGGTACCAGTTAAACCGCTTAGT 87 consensus_8947#2 CGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTT-C 216 ** * * * ** * * ** consensus_8947#0 -TCCAAAGGTT-TAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATA-TGAT 259 consensus_8947#1 -TCCAAAGGTT-TAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATA-TGAT 473 consensus_8947#3 GTTCGACGTTT-T--GTACTGATTATTAAA-CTGTGTTTTGAACCATTAATACCG-TAAT 142 consensus_8947#2 ATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCT 276 * * * * * * * * ** ** * * ** * ** * * consensus_8947#0 AATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAACGTTCAGCTAGTCGTAAA 319 consensus_8947#1 AATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAAC----------------- 516 consensus_8947#3 AACC--AGAACTTCGACTTGTTGCAGTT-------------------------------- 168 consensus_8947#2 AGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT------------------- 317 * * * * * consensus_8947#0 CGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATGGATACCACAAAGTGGTGAA 379 consensus_8947#1 ------------------------------------------------------------ consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 CAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTCTCTAACGAATCGTGATGAA 439 consensus_8947#1 ------------------------------------------------------------ consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 CGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTTACGAGATTTTACTGTACCA 499 consensus_8947#1 ------------------------------------------------------------ consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 AAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATATTACATCTAATAATATTGT 559 consensus_8947#1 ------------------------------------------------------------ consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 CTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATCGGAATCATGATGATGATGA 619 consensus_8947#1 ------------------------------------------------------------ consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 TGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACCATGGATATAATGANTATAA 679 consensus_8947#1 ------------------------------------------------------------ consensus_8947#3 ------------------------------------------------------------ consensus_8947#2 ------------------------------------------------------------ consensus_8947#0 CGATAATAATGTTGATAAACATGTAACCAATC 711 consensus_8947#1 -------------------------------- consensus_8947#3 -------------------------------- consensus_8947#2 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||