These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1004 fasta sequence [CCCTCGAGCCAANAATTCGGCACGAGGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTTTACATCGATACCAAATCGATTCTATGGTTAGCTTTGGCTTAGAGGACACTTACATTTCGTCTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTG-TCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACT-CCATTAATTACAGCTGTTTGTGAACAATGTGTAGAAC-ATTNCA-AACTCATATACAGGAA-TTGTGTNAAAGAGGATTGCAT-AN-ATACCGA-TATCACTTGCAGAAATCCTGATTCATGATTCCNTNATTGGTTTACAAAATCTTTTTTCTANAGACTTAAAGTCGACATTTCCTCAAGATCTCGTCGGTGGAACAGTTAGTACCTATGACTACTACATTTTTCTGACGAAAGACTTGTTTTAGATATTCTTCTTTCGGATGAACA] [+] EMBL CD081976 [CCCTCGAGCCAANAATTCGGCACGAGGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTTTACATCGATACCAAATCGATTCTATGGTTAGCTTTGGCTTAGAGGACACTTACATTTCGTCTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTGNTCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGNTATAATGATACTACACANAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTNNCATT ATTACAGCTGTTTGTGAACCATGTGTANAAC ATTNCA AACTCATATACGGNAATTTGTGT ANAGAGGATTGCAT AN ATACCGA TATCACTTGCAGAAATCCTGATTCATGATTCCNTNATTGGTTTACAAAATCTTTTTTCTANAGACTTAAAGTCGACATTTCCTCAAGATCTCGTCGGTGGAACAGTTAGTACCTATGACTACTACATTTTTCTGACGAAAGACTTGTTTTAGATATTCTTCTTTCGGATGAACA] [-] EMBL CD068562 [ GATGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTTTACATCGATACCAAATCGATTCTATGGTTAGC TTGGCTGAGAGGACACTTACATTTCGTCTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTTGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCC ATCATTGTTCATTACATTG TCGTTCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCGACA GA CACCA ] [+] EMBL CD078306 [ GGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTG TCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACT CCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAA AACTCATATACAGGAA TTGTGTNAAAGAGGATTGCAT ANAATACCGATTATCACTTGCAGAAATCC ] [+] EMBL CD078394 [ GGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTG TCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACT CCATTAATTACAGCTGTTTGTGAACAATGTGTAGAAC AATTCANAACTCATATACAGGAA TTGTGTAAAAGAGGATTGCATAAA ATACCGA Ttat ] consensusID : consensus_8949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 696 fasta sequence [TCCTGTTGTAAACAGTGCAACAGGACCCCCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATATTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTGAAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGCATC] [-] EMBL CD072956 [TCCTGTTGTAAACAGTGCAACAGGACCCCCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAATAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATAT ] [+] EMBL CD082476 [ CGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATATTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTGAAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGCAT ] [-] EMBL CD076074 [ GTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATATTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTGAAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGCATC] consensusID : consensus_8949#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TAAGTTGCACGGCTCCAAATGTGAGCGAAATCGCCATACAAGCCGATTGTGACGTTGATGATACTGAACCGCAGAAAGATGAACATGACGTGTTAGACTTTAGCAGTCCATTTCTATTCAGTGATGCTGTTCTGATTGTTCAGGGTAGAAATCTTCATTGTCATCGTGCTATTCTATCCATATATTCACCAGTATTCAAAGCTATGTTTCAAAATCGATGCATTGAAAATCAAAAAAATGAAGTTGTTATACCAGTTGATGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGGTATGTTATTTCATTTTAGTTTGACTGCTCATTTTATTAATTACATTTACATAATCTGTCTAACAAATACGTGGACTTAATTTTTCTAGCATTCGCGGTATTCCCCATTAGGTTTTTCTCACTAGGGGGCANACGGTGGTGCTGAATTCTACGTGGAGTTTCTTAGAATGTCTATGGATCGCGTACAAATAGATTCTTGTGTTGCTGGTGAATTACTGTTGCATAAAAACAATACACCTTAGTATTTACCCATGATTGTCTATAAATGTGGCTTGTAGCGGCTGCCTGTNACACATATGTGTATTTATTGCAACTTCTAGACAGACGCATCATTGGTTATTCTGTAACTCCC] [+] EMBL CD148289 [TAAGTTGCACGGCTCCAAATGTGAGCGAAATCGCCATACAAGCCGATTGTGACGTTGATGATACTGAACCGCAGAAAGATGAACATGACGTGTTAGACTTTAGCAGTCCATTTCTATTCAGTGATGCTGTTCTGATTGTTCAGGGTAGAAATCTTCATTGTCATCGTGCTATTCTATCCATATATTCACCAGTATTCAAAGCTATGTTTCAAAATCGATGCATTGAAAATCAAAAAAATGAAGTTGTTATACCAGTTGATGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGGTATGTTATTTCATTTTAGTTTGACTGCTCATTTTATTAATTACATTTACATAATCTGTCTAACAAATACGTGGACTTAATTTTTCTAGCATTCGCGGTATTCCCCATTAGGTTTTTCTCACTAGGGGGCANACGGTGGTGCTGAATTCTACGTGGAGTTTCTTAGAATGTCTATGGATCGCGTACAAATAGATTCTTGTGTTGCTGGTGAATTACTGTTGCATAAAAACAATACACCTTAGTATTTACCCATGATTGTCTATAAATGTGGCTTGTAGCGGCTGCCTGTNACACATATGTGTATTTATTGCAACTTCTAGACAGACGCATCATTGGTTATTCTGTAACTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8949#0 CCCTCGAGCCAANAATTCGGCACGAGGAATTTGATGACATAAGAGAAATGTTACGTCACA 60 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 TGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTT 120 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 TACATCGATACCAAATCGATTCTATGGTTAGCTTTGGCTTAGAGGACACTTACATTTCGT 180 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 CTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGA 240 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 TTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCG 300 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 ----------------------------------------TAAGTTGCACGGCTCCAAAT 20 consensus_8949#0 TTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAA 360 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 GTGAGCGAAATCGCCATACAAGCCGATTGTGACGTTGATGATACTGAACCGCAGAAAGAT 80 consensus_8949#0 GTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATG 420 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 G-------AACATGACGTGTTAGACTTTAGCAGTCCATTTCTATTCAGTGATGCTGTTCT 133 consensus_8949#0 GAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTGTCGTCCGTTTTCA 480 consensus_8949#1 ------------------------------------------------------------ consensus_8949#2 GATTGTTCAGGGTAGAAATCTTCATT--GTCATCGT--GCTATTCTATC-CATATATTCA 188 consensus_8949#0 ACAATCACTTTTAGTCCTGTTGTAAA--CAGTGCAACAGGACCACCAATCAATAATAGTG 538 consensus_8949#1 --------------TCCTGTTGTAAA--CAGTGCAACAGGACCCCCAATCAATAATAGTG 44 consensus_8949#2 CCAGT-ATTCAAAGCTATGTTTCAAAATCGATGCATTGAAA------ATCAA-AAAAATG 240 **** *** * **** * ***** ** * ** consensus_8949#0 CAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATA-ATGACGTAGC-TGC 596 consensus_8949#1 CAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATA-ATGACGTAGC-TGC 102 consensus_8949#2 AAGTT---GTTATACCAGTTGATGAATTTGATGACATAAGAGAAATGTTACGTCACATGT 297 ** * * *** * ** * * **** * * * * **** * ** consensus_8949#0 AAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGG-GATAATG 655 consensus_8949#1 AAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGG-GATAATG 161 consensus_8949#2 ACACACCTGGTGGTTGTGATATGACAGGTATGTTATTTCATTTTAGTTTGACTGCTCATT 357 * ** * ** * * ** ** **** * * ** * * ** consensus_8949#0 GTAATAATGATACT-ACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACT 714 consensus_8949#1 GTAATAATGATACT-ACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACT 220 consensus_8949#2 TTATTAATTACATTTACATAATCTGTCTAACAAATACGTGGACTTAATTTTTCTAGCATT 417 ** **** * * * *** ** * * * * * * * *** *** * * consensus_8949#0 -GCAGTGATACC-ATCAATTCCTAATACTCCATTAATTACA-GCTGTTTGTGAACAATGT 771 consensus_8949#1 -GCAGTGATACC-ATCAATTCCTAATACTCCATTAATTACA-GCTGTTTGTGAACAATGT 277 consensus_8949#2 CGCGGTATTCCCCATTAGGTTTTTCT-CACTAGGGGGCANACGGTGGTGCTGAATTCTAC 476 ** ** * ** ** * * * * * * * * * * ** * **** * consensus_8949#0 GTAGAACATTNCAAA-CTCATATACAGGAATTGTGTNAAAGAGGATTGCATANA-TACCG 829 consensus_8949#1 GTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCG 337 consensus_8949#2 GTGGAGTTTCTTAGA----ATGTCTATGGATCGCGTACAAATAGATT-CTTGTGTTGCTG 531 ** ** * * ** * * * ** * ** ** **** * * * * * consensus_8949#0 AT--ATCACT--TGCA-GAAATCCTGA--TTCATG-ATTCCNTNATTGGTTT-ACAAAAT 880 consensus_8949#1 ATT-ATCACT--TGCA-GAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAAT 393 consensus_8949#2 GTGAATTACTGTTGCATAAAAACAATACACCTTAGTATTTACCCATGATTGTCTATAAAT 591 * ** *** **** *** * * *** ** * * **** consensus_8949#0 CTTTTTTCT---ANAGACT-TAAAGTCG--ACATTTCC---TCAAGAT-CTC-GTCG-GT 928 consensus_8949#1 TCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGT 453 consensus_8949#2 GTGGCTTGTAGCGGCTGCCTGTNACACAT-ATGTGTATTTATTGCAACTTCTAGACAGAC 650 ** * * * * * * * * * * consensus_8949#0 GGAACAG--TTAGTACC----TATGAC-TACTACATTTTTCTGACGAAAGACTTGTTTTA 981 consensus_8949#1 GAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAG 513 consensus_8949#2 GCATCA---TTGGTTATTC--TGTAACTCCC----------------------------- 676 * * ** ** ** * ** * consensus_8949#0 GATATTCTTCTTTCGGATGAACA------------------------------------- 1004 consensus_8949#1 AACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATA 573 consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 ------------------------------------------------------------ consensus_8949#1 TTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTG 633 consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 ------------------------------------------------------------ consensus_8949#1 AAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGC 693 consensus_8949#2 ------------------------------------------------------------ consensus_8949#0 --- consensus_8949#1 ATC 696 consensus_8949#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||