These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1226 fasta sequence [TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATTAAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATATTTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGTGAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAGCGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCCAGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCCGATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAAATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGAGAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGAATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCCGTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCTAATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGGATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTATTTGTTTAAATGATTTGAATTTTAGA] [-] EMBL CD162709 [TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATTAAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATATTTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGTGAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAGCGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCCAGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTA ] [+] EMBL CD137759 [ AGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCCAGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCCGATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAAATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGAGAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGAATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCCGTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCTAATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATT ] [+] EMBL CD140753 [ GACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCCGTTGAGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCTAATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCAT ] [-] EMBL CD140787 [ TTCTCGTCGACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATCATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGGAT ] [-] EMBL CD140827 [ TATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGGAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGGAT ] [-] EMBL CD131669 [ GTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGAATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTATTTGTTTAAATGATTTGAATTTTAGA] [-] EMBL CD131618 [ GTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGAATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTATTTGTTTAAATGATTTGAATTTTAGA] consensusID : consensus_8951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACCAGCCATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAATTATTCCCAAAGGGATATAATATTTCCAATTAATATATATAGATAATTAGAT] [+] EMBL AW146530 [AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACCAGCCATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAATTATTCCCAAAGGGATATAATATTTCCAATTAATATATATAGATAATTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8951#0 TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATT 60 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 AAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATAT 120 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 TTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGT 180 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 GAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAG 240 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 CGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCC 300 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 AGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCC 360 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 GATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAA 420 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 ATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGA 480 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 GAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGA 540 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 ATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCC 600 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 GTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCT 660 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 AATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAAT 720 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 GAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTC 780 consensus_8951#1 ----------------AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTC 44 ******************************************** consensus_8951#0 ACCAAATTCACGA-CCATTGATTACTGGAATAATAT-GAAACAATACACGCACCAGTAAT 838 consensus_8951#1 ACCAAATTCACCAGCCATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAAT 104 *********** * ****************** *** *********************** consensus_8951#0 TATTCTCTAGGGGATATAATATTTTCA-TTAATGTATATGGTAAATTAGTGTAAACAACT 897 consensus_8951#1 TATTCCCAAAGGGATATAATATTTCCAATTAATATATATAGATAATTAGAT--------- 155 ***** * * ************** ** ***** ***** * ****** consensus_8951#0 GTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACAT 957 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 AAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATG 1017 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 GTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTT 1077 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 AAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGG 1137 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 AAGATCAATGGATAGGGATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAAT 1197 consensus_8951#1 ------------------------------------------------------------ consensus_8951#0 CTATTTGTTTAAATGATTTGAATTTTAGA 1226 consensus_8951#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||