cluster # 8951

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Schistosoma mansoni
cluster # 8951 cluster # 8951 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8951#0 length = 1226 sequences # 7

consensus_8951#1 length = 155 sequences # 1

consensusID : consensus_8951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1226
fasta sequence

                              [TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATTAAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATATTTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGTGAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAGCGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCCAGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCCGATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAAATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGAGAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGAATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCCGTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCTAATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGGATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTATTTGTTTAAATGATTTGAATTTTAGA]

[-] EMBL CD162709             [TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATTAAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATATTTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGTGAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAGCGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCCAGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD137759             [                                                                                                                                                                                                                                                                 AGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCCAGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCCGATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAAATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGAGAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGAATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCCGTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCTAATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATT                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD140753             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCCGTTGAGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCTAATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCAT                                                                                                                                                                                                                       ]
[-] EMBL CD140787             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCTCGTCGACAAATGAATCATTCAATGAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATCATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGGAT                                                                      ]
[-] EMBL CD140827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TATGTGCATATGTCTTTCTAATTCACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTATTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGGAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGGAT                                                                      ]
[-] EMBL CD131669             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGAATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTATTTGTTTAAATGATTTGAATTTTAGA]
[-] EMBL CD131618             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTACATAAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAGATCAATGGATAGGAATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTATTTGTTTAAATGATTTGAATTTTAGA]




>consensus_8951#0
TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATT
AAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATAT
TTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGT
GAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAG
CGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCC
AGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCC
GATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAA
ATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGA
GAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGA
ATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCC
GTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCT
AATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAAT
GAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTC
ACCAAATTCACGACCATTGATTACTGGAATAATATGAAACAATACACGCACCAGTAATTA
TTCTCTAGGGGATATAATATTTTCATTAATGTATATGGTAAATTAGTGTAAACAACTGTG
ATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACATAAA
TTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATGGTT
ATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTTAAA
TTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGGAAG
ATCAATGGATAGGGATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAATCTA
TTTGTTTAAATGATTTGAATTTTAGA

consensusID : consensus_8951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACCAGCCATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAATTATTCCCAAAGGGATATAATATTTCCAATTAATATATATAGATAATTAGAT]

[+] EMBL AW146530             [AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACCAGCCATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAATTATTCCCAAAGGGATATAATATTTCCAATTAATATATATAGATAATTAGAT]




>consensus_8951#1
AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTCACCAAATTCACCAGCC
ATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAATTATTCCCAAAGGGATA
TAATATTTCCAATTAATATATATAGATAATTAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8951#0      TCGCCTATACAGGATTATGGTAATTTTAAAAATTGNTAAAAAAGCAAGATCTGTATTATT 60
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      AAACCGAGAAGCACTTAATACACCACAAACGGATGATAAGTCAGTTGATGTACAAAATAT 120
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      TTCCTCTTCCAAAAATAACTCAAACAATTCTTCATATAATACACAACAATGTGATCTTGT 180
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      GAAACAACCCAATATACCTAATCTGAGCTCAGTTCAAACAAAAACGTATTCAGAACTAAG 240
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      CGTTTCATATCCAAGCAAGCAAAATGAACAAATGTGTCAACGTGTCTATGATTCTGTTCC 300
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      AGATAACTCTTCAGCATGCAATGGCAATAAAAGAGCATTTGATTCTAAACTATCTACCCC 360
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      GATACCTGGAAAACGTGCATTTTTAAATTTTCAAAGTGAAAATACCTTGAAACATGATAA 420
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      ATCATCACATCGAAATACATCAAATGTGATGTATAGTTTAACTACTCCATACAATACAGA 480
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      GAATATGAAAAATAGTCCAATTGAACCAATATTTAATCAAAATGACAATAACGATGATGA 540
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      ATATGACGATACTAACGATGATGATGATGATGATGTCATTATGTATTCAAAATCTTATCC 600
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      GTTGTGTAAATGTCGATTGTCAATTCAAAATTCTGAAGTATGTGGTTTAGGAAATGATCT 660
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      AATCGCACCAAATGAAGTATTATTATCGAGTACTTCTCTTCAACAAATGAATCATTCAAT 720
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      GAATTATGAAGAAATTAGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTC 780
consensus_8951#1      ----------------AGTAATGATTATGGACGAGATATGTGCATATGTCTTTCTAATTC 44
                                      ********************************************

consensus_8951#0      ACCAAATTCACGA-CCATTGATTACTGGAATAATAT-GAAACAATACACGCACCAGTAAT 838
consensus_8951#1      ACCAAATTCACCAGCCATTGATTACTGGAATATTATTGAAACAATACACGCACCAGTAAT 104
                      *********** * ****************** *** ***********************

consensus_8951#0      TATTCTCTAGGGGATATAATATTTTCA-TTAATGTATATGGTAAATTAGTGTAAACAACT 897
consensus_8951#1      TATTCCCAAAGGGATATAATATTTCCAATTAATATATATAGATAATTAGAT--------- 155
                      ***** * * ************** ** ***** ***** *  ******           

consensus_8951#0      GTGATATAAAGTCTTATTCATATTAGCATCAATATATACAGTTTACATGTGATTGTACAT 957
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      AAATTATGAACATATCTATCAATCTCAGGGATTAAACTATTCATATTCAACCATTTTATG 1017
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      GTTATTCACATTGTCATACATACAAAAAACGAAACTGTAAATTTAAGTTCTCCTATCGTT 1077
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      AAATTCTTCGAAATGAAAATCCATTTTTCTTCCTTATGATTTTTCAATTTAATTACAAGG 1137
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      AAGATCAATGGATAGGGATAATTCAACAATGATCTATCTGTGATTCATTTACTCTAGAAT 1197
consensus_8951#1      ------------------------------------------------------------
                                                                                  

consensus_8951#0      CTATTTGTTTAAATGATTTGAATTTTAGA 1226
consensus_8951#1      -----------------------------