These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1183 fasta sequence [ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAACCCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGGAGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTTATACAGCTTTTCTTTTGTTTTCATC-CTGCTATACTTCCTGAGGGTTTACAACTACTGGAAGAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGATCTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACACGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTGTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTTAATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTTACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAAGAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACATAGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGAAGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT] [-] EMBL CD068458 [ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAACCCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGGAGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTTATACAGCTTTTCTTTTGTTTTCATC CTGCTATACTTCCTGAGGGTTTACAACTACTGGAAGAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGATCTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACACGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTG ] [-] EMBL CD069036 [ CTTTGTAAGAAGCTGTGCTTTGTTGGAGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCGTCAGACCGGCGCTTGTGTTATACAGCTTTTCTTTTGTTTTC TCTGTGCTggccatcc ] [-] EMBL CD183916 [ CCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTGTTCCGTAACACCCTTGCTCTGCACGGTATCCAAAGACTTACCTCCTGTCTTATACACATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACCAACCTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATT ] [-] EMBL CD183915 [ CCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTGTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATT ] [+] EMBL CD081161 [ cgaACCCCTGCTC GCAC ATATCC AAGACTTACCTCCTGTCTTATACATATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACTAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTTAATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTTACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAAGAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACATAGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGAAGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT] [-] EMBL CD166570 [ TACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTCCTCGGTGCt ] [-] EMBL CD200753 [ ccataTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTTAATATGGAATGGTGCATGTTTTTATTTA ] consensusID : consensus_8952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CAGTTTGTGGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGGACTACACAAACAATTTTGGTCACTACTCAGTGAACAATCAATTGCTCGTAACTCCTCAGTCTTATAGGAGGTGATCAGTCTCTATCCGAATAGCTCAATGGTGTAACGCCTCCCGTAACATGAAGCTGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCAAGATCTCAGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTG] [-] EMBL CD196465 [CAGTTTGTGGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGGACTACACAAACAATTTTGGTCACTACTCAGTGAACAATCAATTGCTCGTAACTCCTCAGTCTTATAGGAGGTGATCAGTCTCTATCCGAATAGCTCAATGGTGTAACGCCTCCCGTAACATGAAGCTGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCAAGATCTCAGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8952#0 ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAAC 60 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 CCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGG 120 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 AGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTT 180 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 ATACAGCTTTTCTTTTGTTTTCATCCTGCTATACTTCCTGAGGGTTTACAACTACTGGAA 240 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 GAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGAT 300 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 CTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACA 360 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 CGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTT 420 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 GTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACAT 480 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 CTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTG 540 consensus_8952#1 --------------------------------------------------CAGTTTGTGG 10 ******* * consensus_8952#0 GTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATAT 600 consensus_8952#1 GTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATAT 70 ************************************************************ consensus_8952#0 TGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATA 660 consensus_8952#1 TGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATA 130 ************************************************************ consensus_8952#0 TTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATA 720 consensus_8952#1 TTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATA 190 ************************************************************ consensus_8952#0 TTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCA 780 consensus_8952#1 TTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGG-ACTA 249 ****************************************************** * consensus_8952#0 TTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGT 840 consensus_8952#1 CACAAACAATTT--TGGTC---ACTACTCAGTGAACAATCAATTGCTCGTAACTCCTCAG 304 * * ** * * * * ** * * * ** * * * consensus_8952#0 CGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTT 900 consensus_8952#1 TCTTATAGGAGGTGATCAGTC--TCTATCCGAATAGCTCAATGGTGTAA-CGCCTCCCGT 361 ** * * * ** * ** ** * ** * *** * ** * * * consensus_8952#0 AATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTT 960 consensus_8952#1 AACATGAAGC--TGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCA--- 416 ** *** * ** ** * * ** ** * * * ***** * * * consensus_8952#0 ACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAA 1020 consensus_8952#1 ------AGATCTCAGATGGCATTTGATTAGT-TGGATAGCCTGCAGTATCTTACTG---- 465 *** * ****** * * ** * *** * ** consensus_8952#0 GAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACAT 1080 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 AGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGA 1140 consensus_8952#1 ------------------------------------------------------------ consensus_8952#0 AGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT 1183 consensus_8952#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||