These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 699 fasta sequence [TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTC-CAACCCTCCTCCTTTACCCGGGCTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCTTTAGCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGATTGTGAATTAATCATTTTCTCACTACTACTAATCGTAGTAAA] [-] EMBL CD156913 [TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTCCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTA ] [-] EMBL BG932364 [ AGATACAACTGCTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTCTATAGGATGATATACTTACTATTCTCCCTTGGTAAACAGCGCCTATCATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTA TTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTC CAACCCTC ] [+] EMBL CD164743 [ CTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATG ] [-] EMBL CD182528 [ TGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCA ] [+] EMBL CD081216 [ TCCTAT AGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACCGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATCATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTCTCAACCCTCCTCCTTTACCCGGGCTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCTTTAGCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGATTGTGAATTAATCATTTTCTCACTACTACTAATCGTAGTAAA] consensusID : consensus_8953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 468 fasta sequence [GGTTGACCGTTAACCCCATGGCCAAACCCTCCTCTTTAACCCGGGGTTTGGGACCGACGGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTATATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAATAAAAAAAAAAAAATAATCATTCTCATCACTACTACTAATAGTAGTAAATCAAGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI394978 [GGTTGACCGTTAACCCCATGGCCAAACCCTCCTCTTTAACCCGGGGTTTGGGACCGACGGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTATATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAATTAAAAAA ] [-] EMBL AI395416 [ tgGGGACGGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATCTGTTTCTTGTATGCTAACTCCCCTTTCTATTCTCTGTGTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAAAAAAAAAAAAAAAA ] [-] EMBL AI394937 [ tctcaCATCC TCATATCCAATCAATGCTTGCTTTGCCCAATGATTTTCTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTACCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAGTGTTGATGTTGAATTAATCATTCTCATCACTACTACTAATAGTAGTAAATCAAGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8953#0 TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTAT 60 consensus_8953#1 ------------------------------------------------------------ consensus_8953#0 TCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAG 120 consensus_8953#1 ------------------------------------------------------------ consensus_8953#0 TGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATA 180 consensus_8953#1 ------------------------------------------------------------ consensus_8953#0 CTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGC 240 consensus_8953#1 ------------------------------------------------------------ consensus_8953#0 GTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGAC-GATAACCCCATGTCCAA-C 298 consensus_8953#1 ---------------------------------GGTTGACCGTTAACCCCATGGCCAAAC 27 *** *** * ********** **** * consensus_8953#0 CCTCCTCCTTTACCCGGG-CTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAG 357 consensus_8953#1 CCTCCTCTTTAACCCGGGGTTTGGGACCGACGGTAGCCCCCGGAAGACCTACAGGCGGAG 87 ******* ** ******* *********** **************************** consensus_8953#0 TTTTTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCT 417 consensus_8953#1 TTTTTGGTTATATAATATCAGTATATTTTTTTCTTATATGCTAACTCCCCTTTCTATTCT 147 *********************************** ************************ consensus_8953#0 CTTTTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTT 477 consensus_8953#1 CTTTTTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTT 207 ******************************** *************************** consensus_8953#0 TTTTTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTT 537 consensus_8953#1 TTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTT 267 *********************************** ******** * ************* consensus_8953#0 TATTCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCT 597 consensus_8953#1 TATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCT 327 ******************************* ******* ***** ********** consensus_8953#0 TTAGCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGA 657 consensus_8953#1 TATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAATAAAAA 387 * * ************ ***** ***** ************ *** ****** * consensus_8953#0 TTGTGAATTAATCATTTTC-TCACTACTACTAATCGTAGTAAA----------------- 699 consensus_8953#1 AAAAAAAATAATCATTCTCATCACTACTACTAATAGTAGTAAATCAAGTACCCAAAAAAA 447 ** ******** ** ************** ******** consensus_8953#0 --------------------- consensus_8953#1 AAAAAAAAAAAAAAAAAAAAA 468 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||