cluster # 8958

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Schistosoma mansoni
cluster # 8958 cluster # 8958 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8958#0 length = 750 sequences # 3
consensus_8958#1 length = 580 sequences # 3

consensus_8958#2 length = 486 sequences # 1
consensus_8958#3 length = 298 sequences # 1

consensusID : consensus_8958#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 750
fasta sequence

                              [CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACA-CGTTGTACAAAAACATATACAGAA-GGCGCGTCATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTAGCAATTCTCCTCGAACAATCCTCCAAACCTGGTAATAATCCTGGGGGACTG]

[+] EMBL CD082236             [CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACA CGTTGTACAAAAACATATACAGAA GGCGCGTCATTATTTAGTATTTTTGGCTT                                                                    ]
[+] EMBL BF936723             [                                                                                                                                                                                            TCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACACCGTTGTACAAAAACATATACAGAAGGGCGCGTCATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTAGCAATTCTCCTCGAACAATCCTCCAAACCTGGTAATAATCCTGGGGGACTG]
[+] EMBL CD077886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTAACCTACAATCGACATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTC TACAGATTATGCTTTAGAATCATCTGGA                                                                                                                                             ]




>consensus_8958#0
CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAA
CTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGA
AGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACAC
TACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTA
AAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAG
CTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTA
AAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCA
CTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACA
ATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGA
TTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAG
AATCATCTGGAGGCTCTATTGTTGGCACACGTTGTACAAAAACATATACAGAAGGCGCGT
CATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTAGCAATTCTCCTCGAACAATCC
TCCAAACCTGGTAATAATCCTGGGGGACTG

consensusID : consensus_8958#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 580
fasta sequence

                              [TAAATATATTTAAACATAAAACATAAAAGCGATAAAATCAAATGGTTTAAAATGTTACAGAGCAAAACGTTTGATTAGGAGGATGACATGAGGGCACAATAATCATCTTGTTAAGAAAACAGTAATTGCAGTGTGTACAGAGCAGCATGAAGGGTGACGTGTTACGTATATGTATCTACAAAGTATTGCTGAACTCTGATCATGTAATCATATTGCCATGAACTCGAAAGCGATAAATACACGTATATTTGGGATGTCCGTGATTACTCAGTATGACAAGTTCGACAAATTGGACAGATTTTGAATATTCCTTTATAGGAAAATTTTGTATGGGTCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGACCCTTACTTCCGTGAAATGGCCAACAGTCCCCAGGATTATTACCAGGTTGGAGGATTGT]

[+] EMBL CD075846             [TAAATATATTTAAACATAAAACATAAAAGCGATAAAATCAAATGGTTTAAAATGTTACAGAGCAAAACGTTTGATTAGGAGGATGACATGAGGGCACAATAATCATCTTGTTAAGAAAACAGTAATTGCAGTGTGTACAGAGCAGCATGAAGGGTGACGTGTTACGTATATGTATCTACAAAGTATTGCTGAACTCTGATCATGTAATCATATTGCCATGAACTCGAAAGCGATAAATACACGTATATTTGGGATGTCCGTGATTACTCAGTATGACAAGTTCGACAAATTGGACAGATTTTGAATATTCCTTTATAGGAAAATTTTGTATGGGTCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGACCCTTACTTCCGTGAAATGGCCAACAGTCCCCAGGATTATTACCAGGTTGGAGGATTGT]
[-] EMBL BG930401             [                                                                                                                                                                                                                                                                                                                                              TCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGAC                                                          ]
[+] EMBL BG931509             [                                                                                                                                                                                                                                                                                                                                             cTCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCAGA                                                                                                                                                              ]




>consensus_8958#1
TAAATATATTTAAACATAAAACATAAAAGCGATAAAATCAAATGGTTTAAAATGTTACAG
AGCAAAACGTTTGATTAGGAGGATGACATGAGGGCACAATAATCATCTTGTTAAGAAAAC
AGTAATTGCAGTGTGTACAGAGCAGCATGAAGGGTGACGTGTTACGTATATGTATCTACA
AAGTATTGCTGAACTCTGATCATGTAATCATATTGCCATGAACTCGAAAGCGATAAATAC
ACGTATATTTGGGATGTCCGTGATTACTCAGTATGACAAGTTCGACAAATTGGACAGATT
TTGAATATTCCTTTATAGGAAAATTTTGTATGGGTCTACTATTCACATCATAGGTAAATT
CTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCG
GAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTG
AACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGACCCTTACTTCCGTGAAATG
GCCAACAGTCCCCAGGATTATTACCAGGTTGGAGGATTGT

consensusID : consensus_8958#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATCGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGGCAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTA]

[+] EMBL CD124749             [AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATCGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGGCAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTA]




>consensus_8958#2
AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATA
CGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAAT
AATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATC
AATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACT
TTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGAT
CGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTT
TCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGGCAGTGAT
AGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGAT
AAATTA

consensusID : consensus_8958#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTNTAGAATCATCTGGAGGCTCTATNTTGTGCACACGTTGTACAAAAACA]

[+] EMBL CD077998             [CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTNTAGAATCATCTGGAGGCTCTATNTTGTGCACACGTTGTACAAAAACA]




>consensus_8958#3
CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATAATCAATGAATTAAGGGACAGTGA
TAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGA
TAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAAC
TTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTAC
AGATTATGCTNTAGAATCATCTGGAGGCTCTATNTTGTGCACACGTTGTACAAAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8958#0      -------------CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATA 47
consensus_8958#2      AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATA 60
consensus_8958#3      ------------------------------------------------------------
consensus_8958#1      ------------------------------------------------------------
                                                                                  

consensus_8958#0      CGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAAT 107
consensus_8958#2      CGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAAT 120
consensus_8958#3      ------------------------------------------------------------
consensus_8958#1      ------------------------------TAAATATATTTAAACATAAAACATAAAAGC 30
                                                                                  

consensus_8958#0      AATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAA---TAAA 164
consensus_8958#2      AATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAA---TAAA 177
consensus_8958#3      -----------------------CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATA 37
consensus_8958#1      GATAAAATCAAATGGTTTAAAATGTTACAGAGCAAAACGTTTGATTAGGAGGATGACATG 90
                                                    *  **     *        *  *    *  

consensus_8958#0      ATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGA-ATCTAAGTC 223
consensus_8958#2      ATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGA-ATCTAAGTC 236
consensus_8958#3      ATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACA-AACTGTATC 96
consensus_8958#1      AGGGCACAATAATCATCTTGTTA-AGAAAACAGTAATTGCAGTGTGTACAGAGCAGCATG 149
                      *       ** *       *                        *  * * * *    * 

consensus_8958#0      CACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAA 283
consensus_8958#2      CACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAA 296
consensus_8958#3      TACGCTGGCAAA-----AGAATCCGTTGATAAATTAATTTACAATCGTC---ATTCGGAA 148
consensus_8958#1      AAGGGTGACGTGTTACGTATATGTATCTACAAAGTATTGCTGAACTCTGATCATGTAATC 209
                       *   *  *           **   *  * *** *  *    *         **      

consensus_8958#0      GGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTC 343
consensus_8958#2      GGATCGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTC 356
consensus_8958#3      TTGGTTCCACACTC--ACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTC 206
consensus_8958#1      ATATTGCCATGAACTCGAAAGCGATAAATACACGTATATTTGGGATGTCCGTGATTACTC 269
                            ***              *  *    *  * *        *            **

consensus_8958#0      ATTTT--CAACT--CAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGG 399
consensus_8958#2      ATTTT--CAACT--CAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGG 412
consensus_8958#3      TTCAT--CTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTNTA-GAATCATCTG 263
consensus_8958#1      AGTATGACAAGTT-CGACAAATTGGACAGATTTTGAATATTCCTTTATAGGAAAATTTTG 328
                          *  * * *  *     *  * *    *     * * *    *  * ***      *

consensus_8958#0      ACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAAT 459
consensus_8958#2      GCAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAAT 472
consensus_8958#3      GAGGCTCTA---TNTTGTGCACACGTTGTACAAAAACA---------------------- 298
consensus_8958#1      TATGGGTC----TACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCAT 384
                         *        *  * * ***    *    * *  *                       

consensus_8958#0      CCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACA 519
consensus_8958#2      CCGTTGATAAATTA---------------------------------------------- 486
consensus_8958#3      ------------------------------------------------------------
consensus_8958#1      ATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTG 444
                                                                                  

consensus_8958#0      AAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCG 579
consensus_8958#2      ------------------------------------------------------------
consensus_8958#3      ------------------------------------------------------------
consensus_8958#1      GCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATA 504
                                                                                  

consensus_8958#0      GTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACACGTTGTACAA 639
consensus_8958#2      ------------------------------------------------------------
consensus_8958#3      ------------------------------------------------------------
consensus_8958#1      GACGAATGATAGCTTGACCCTTACTTCCGTGAAATGGCCAACAGTCCCCAGGATTATTAC 564
                                                                                  

consensus_8958#0      AAACATATACAGAAGGCGCGTCATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTA 699
consensus_8958#2      ------------------------------------------------------------
consensus_8958#3      ------------------------------------------------------------
consensus_8958#1      CAGGTTGGAGGATTGT-------------------------------------------- 580
                                                                                  

consensus_8958#0      GCAATTCTCCTCGAACAATCCTCCAAACCTGGTAATAATCCTGGGGGACTG 750
consensus_8958#2      ---------------------------------------------------
consensus_8958#3      ---------------------------------------------------
consensus_8958#1      ---------------------------------------------------