These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1286 fasta sequence [ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTTGTGAATGTATTTG-AATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATAATGGTGACCAAAA--AAAAATATTGTATATACACATAGTTTAAACAAAAAGTCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTAATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAACCAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAAATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGTTGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTACTATGCTGA-TTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTAT-GTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT-GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATAT-AACAC-GTAT-AAACTTCATTTATAATGCGCTCGTGC-GAATTAT] [+] EMBL CD075022 [ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTTGTGAATGTATTTG AATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATAATGGTGACCAAAA AAAAATATTGTATATACACATAGTTTAAACAAAAAGTCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTAATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAACCAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAAATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGTTGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTNCAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGGCATTATTATTACTATGCTGATTTTATAGTAA ] [+] EMBL CD076178 [ ATCTTGTGAATGTATTTG AATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATAATGGTGACCAAAA AAAAATATTGTATATACACATAGTTTAAACAAAAAGTCAGTATTCCAATGAGATTTAAAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTAATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAACCAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAAATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGTTGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTCAAATTGGAA ] [+] EMBL SM851 [ TTTGNAATGAAAAAGTAAAACAAAACTGAACAATGAATNTTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATANTGGTGACCAANANNAAAActcg ] [-] EMBL CD081194 [ GTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTACTATGCTGA TTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTAT GTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATAT AACAC GTAT AAACTTCATTTATAATGCGCTCGTGC GAA ] [-] EMBL CD082579 [ AATCGCCCCCGATTTGAAGGAGTGATATTTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATCGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTACTATGTTGA TTGATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTAT GTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATATGAACACTGTATAAAACTTCATTTATAATGCGC GGTCCAGAATTAT] [-] EMBL CD197602 [ taATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTATGGTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTTCGATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATT ] consensusID : consensus_8959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence [CACNGCTGTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATTTGATCATTTGAAA-TTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATCCTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTATCTGAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT] [-] EMBL CD139588 [CACNGCTGTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATTTGATCATTTGAAA TTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATCCTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTATCTGAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT] [-] EMBL CD139658 [ GGATCTTCAATTTGATCA TTGAAATTTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATCCTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTATCTTAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8959#0 ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTT 60 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 GTGAATGTATTTGAATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACA 120 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 GTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAG 180 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 ACGAATAAATAATGGTGACCAAAAAAAAATATTGTATATACACATAGTTTAAACAAAAAG 240 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 TCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTA 300 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 ATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAAC 360 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 CAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAA 420 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 ATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGT 480 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 TGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTA 540 consensus_8959#1 ---------------------CACNGCTGT-GTTGATCTCGAACACGATTTACAACACTA 38 ** ***** ***************************** consensus_8959#0 GATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACT 600 consensus_8959#1 GATACTCCAACAGATGTAGAAGGTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATT 98 ************************** ******************************* * consensus_8959#0 TGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATT 660 consensus_8959#1 TGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCT 158 ******************************************************* * consensus_8959#0 ATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACG 720 consensus_8959#1 TTAAAGAAAGTAAAACCGAATCCTCACTT----TTTACAGTAAATGGGTGA-ACATAACA 213 * *** * ** * * * * ** ** * ** * * * ***** consensus_8959#0 GCTTTATCAATAGCTTTAGAATAGAC-AGCTGAATTGCCACAGTCACTACTACTAACGGG 779 consensus_8959#1 AAATCAATAA-AATCTGAGCATAAATTATCTGAACGGCAATTATT-TTGTATATAAAGTC 271 * * ** * * ** *** * * ***** ** * * * *** * consensus_8959#0 AAT--ATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTA 837 consensus_8959#1 AATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT---------------- 315 *** * ** * *** * ** **** * ** consensus_8959#0 TTACTATGCTGATTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATA 897 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 TCAATTATTGTTTTATGTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGA 957 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 AATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTT 1017 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 ATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCA 1077 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 TTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTC 1137 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 TTTGATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGA 1197 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 GCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATATAACACGTATAAAC 1257 consensus_8959#1 ------------------------------------------------------------ consensus_8959#0 TTCATTTATAATGCGCTCGTGCGAATTAT 1286 consensus_8959#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||