cluster # 8968

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Schistosoma mansoni
cluster # 8968 cluster # 8968 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8968#0 length = 1460 sequences # 7

consensus_8968#1 length = 234 sequences # 1

consensusID : consensus_8968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1460
fasta sequence

                              [ACGAGGCCAAGAATTTGGCACGAGGCGCAGAGACGTTTTTTATTCTTCTCATCATTTAATGACAAAGATTCTCCAGTTCGTATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACTAGTGCTTCAGGATGCAATATTATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTACGGACGGGAACAGCTAGTAACAGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCAACTGGACAAGAGCTAGAGTCACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGTTTTGCTAGTAAATCAGATTGT]

[+] EMBL CD079698             [ACGAGGCCAAGAATTTGGCACGAGGCGCAGAGACGTTTTTTATTCTTCTCATCATTTAATGACAAAGATTCTCCAGTTCGTATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACTAGTGCTTCAGGATGCAATATTATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTACGGACGGGAACAGCTAGTAACAGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCAACTGGACAAGAGCTAGAGTCACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD082808             [                                                                                                                                                                                                                                                                                                                                              gTGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTNTGATGGTCTCTTATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD143115             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGANCCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD149994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATCGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD094775             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD073957             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGT                     ]
[-] EMBL CD076400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATATGTATTTATGGAAAGTTTTGCTAGTAAATCAGATTGT]




>consensus_8968#0
ACGAGGCCAAGAATTTGGCACGAGGCGCAGAGACGTTTTTTATTCTTCTCATCATTTAAT
GACAAAGATTCTCCAGTTCGTATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCAT
GCAGTATTTCAGTCTGCAAACTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACT
AGTGCTTCAGGATGCAATATTATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTAC
GGACGGGAACAGCTAGTAACAGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCA
ACTGGACAAGAGCTAGAGTCACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGT
GAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGG
GATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCA
ACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGA
TTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGAT
GCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACA
GAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAG
GCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTAC
CCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGC
AACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTT
GCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTG
GCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTAC
TGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATA
TGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAA
CTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAAT
GATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATAT
TTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAAT
ATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGC
GAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGTT
TTGCTAGTAAATCAGATTGT

consensusID : consensus_8968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTATGATTCAGATGAAACGATGAATTTGTTAGTTGGTTCTACAGAAGAATATTCTCCAGTTCGTATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC]

[-] EMBL CD067688             [GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTATGATTCAGATGAAACGATGAATTTGTTAGTTGGTTCTACAGAAGAATATTCTCCAGTTCGTATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC]




>consensus_8968#1
GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTAT
GATTCAGATGAAACGATGAATTTGTTAGTTGGTTCTACAGAAGAATATTCTCCAGTTCGT
ATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAAC
TTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8968#0      ---------------------------------------ACGAGGCCAAGAATTTGGCAC 21
consensus_8968#1      GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTAT 60
                                                             *     **  *   ** * * 

consensus_8968#0      GAGGCGCA-GAGACGTTTTTTATTCTTCTCATCATTTAATGACAAAGATTCTCCAGTTCG 80
consensus_8968#1      GATTCAGATGAAACGATGAATTTGTTAGTTGGT-TCTACAGAAGAATATTCTCCAGTTCG 119
                      **  *  * ** *** *   * *  *  *     * **  **  ** *************

consensus_8968#0      TATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAA 140
consensus_8968#1      TATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAA 179
                      ******** ********* **** ************************************

consensus_8968#0      CTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACTAGTGCTTCAGGATGCAATAT 200
consensus_8968#1      CTTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC----- 234
                      *************** ******************* *******************     

consensus_8968#0      TATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTACGGACGGGAACAGCTAGTAAC 260
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      AGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCAACTGGACAAGAGCTAGAGTC 320
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      ACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGT 380
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAAT 440
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      GCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACC 500
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTT 560
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      GAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGG 620
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTC 680
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      AACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTAT 740
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      GTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACC 800
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      GCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAAC 860
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGT 920
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGG 980
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      AAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTC 1040
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      AGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTT 1100
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      ACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTT 1160
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTT 1220
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAAT 1280
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTAC 1340
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATT 1400
consensus_8968#1      ------------------------------------------------------------
                                                                                  

consensus_8968#0      TATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGTTTTGCTAGTAAATCAGATTGT 1460
consensus_8968#1      ------------------------------------------------------------