cluster # 8983

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8983 cluster # 8983 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8983#0 length = 709 sequences # 7

consensus_8983#1 length = 150 sequences # 1

consensusID : consensus_8983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 709
fasta sequence

                              [TGTGCAGTTATTTCGGCACTTCATGGTCTTGAAAATGATCACCATGAACAACTGGATTTTGAGGACGAGAATTTCCCAATAAACCCTTGGGAGACAGAACTACTTTCTTTAAAGAATAATAAGAGAGAGTATCATGAAAGTTCAGCTTCCTCTTCAAGTTCAGAAAGTTCTGAGTCAAGTCCCTA-TGATGAAGGTGAAATGAGAAGTAGTGACGAGTCGGAGTTCAGCAAAGACGAACAGAGTTCCGAAGAAGGAGAAGTGCAATCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTAGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTACCGGTACCCGCACCAGTGGTGGAT-AAAAAAACCGAAACTCCTGTAGAAGATGATTTTTTGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATATCTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAGTTACCAAACATCGTCGTAGTCGAAGTACTAGTCGACGTTTTTCATCTGCGTCATCATCATCCTCTGTCTCATCATCGNCAAAAAGCTCTTCTCGTAGTTCCGCTGCGTCGT]

[-] EMBL CD186808             [TGTGCAGTTATTTCGGCACTTCATGGTCTTGAAAATGATCACCATGAACAACTGGATTTTGAGGACGAGAATTTCCCAATAAACCCTTGGGAGACAGAACTACTTTCTTTAAAGAATAATAAGAGAGAGTATCATGAAAGTTCAGCTTCCTCTTCAAGTTCAGAAAGTTCTGAGTCAAGTCCCTA TGATGAAGGTGAAATGAGAAGTAGTGACGAGTCGGAGTTCAGCAAAGACGAACAGAGTTCCGAAGAAGGAGAAGTGCAATCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAATAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTAGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTACTGG                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD139328             [      GTTATTTCCGCACTTCATTGTCTTGAAAATGATCACCATGAACAACTGGATTTTGAGGACGAGAATTTCCCAATAAACCCTTTGGAGACAGAACTACTTTCTTTAAAGAATCATAAGAGAGAGTATCATGAAAGTTCAGCTTCCTCTTCAAGTTCAGAACGTTCTGATTCAAGTCCCTACTGATGAAGGTGAAATGAGAAGTAGTGACGAGTCGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD154229             [                                                      GATTTTGAGGACGAGAATTTCCCAATAAACCCTTGGGAGACAGAACTACTTTCTTTAAAGAATAATAAGAGAGAGTATCATGAAAGTTCAGCTTCCTCTTCAAGTTCAGAAAGTTCTGAGTCAAGTCCCTA TGATGAAGGTGAAATGAGAAGTAGTGACGAGTCGGAGTTCAGCAAAGACGAACAGAGTTCCGAAGAAGGAGAAGTGCAATCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTAGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTACCGGTACCCGCACCAGTGGTGGAT AAAAAAACCGAAACTCCTGTAGAAGATGATTTTTTGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATATCTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAGTTACCAAACATCGTCGTAGTCGAAGTACTAGTCGACGTT                                                                        ]
[+] EMBL CD066954             [                                                                                                                                                                                                                       AGTCGGAGTTCAGCAAAGACGAACAGAGTTCCGAAGAAGGAGAAGTGCAATCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTAGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTACCGGTACCCGCACCAGTGGTGGATAAAAAAAACCGAAACTCCTGTAGAAGATGATTTTTTGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATATCTTCCGGAGGATATTCTTCCTCCG                                                                                                                                                 ]
[+] EMBL CD182498             [                                                                                                                                                                                                                                                                                                              TAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTAGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTACCGGTACCCGCACCAGTGGTGGAT AAAAAAACCGAAACTCCTGTAGAAGATGATTTTTTGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATATCTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAGTTACCGAACATCGTCGTAGTCGAAGTACTAGTCGACGTTNTTCATCTGCG                                                             ]
[+] EMBL CD182511             [                                                                                                                                                                                                                                                                                                              TAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTAGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTACCGGTACCCGCACCAGTGGTGGAT AAAAAAACCGAAACTCCCGTAGAAGATGATTTTTTGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATATCTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAGTTACCAAACATCGTCGTAGTCGAAGTACTAGTCGACGTTTTTCATCTGCGTCATCATCATCCTCTGTCTCATCATCGNCAAAAAGCTCTTCTCGTAGTTCCGCTGCGTCGT]
[+] EMBL CD182545             [                                                                                                                                                                                                                                                                                                                                                                                                                                  TTACCGGTACCCGCACCAGCGGTGGAT AAAAAAACCGAAACTCCTGTAGAAGATGATTTTTTGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATATCTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAGTTACCAAACATCGTCGTAGTCGAAGTACTAGTCGACGTTTTTCATCTGCGTCATCATCATCCTCTGTCTCATCATCGTCAAGAAGCTCTTCTCGTAGTTCCGCTGCGTCG ]




>consensus_8983#0
TGTGCAGTTATTTCGGCACTTCATGGTCTTGAAAATGATCACCATGAACAACTGGATTTT
GAGGACGAGAATTTCCCAATAAACCCTTGGGAGACAGAACTACTTTCTTTAAAGAATAAT
AAGAGAGAGTATCATGAAAGTTCAGCTTCCTCTTCAAGTTCAGAAAGTTCTGAGTCAAGT
CCCTATGATGAAGGTGAAATGAGAAGTAGTGACGAGTCGGAGTTCAGCAAAGACGAACAG
AGTTCCGAAGAAGGAGAAGTGCAATCTGAAATTGATGAGATCGAGGGAACAGCAGATGTG
GTAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAACGTTTA
GAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCGTATGAATTTA
CCGGTACCCGCACCAGTGGTGGATAAAAAAACCGAAACTCCTGTAGAAGATGATTTTTTG
TGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGATAT
CTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAGTT
ACCAAACATCGTCGTAGTCGAAGTACTAGTCGACGTTTTTCATCTGCGTCATCATCATCC
TCTGTCTCATCATCGNCAAAAAGCTCTTCTCGTAGTTCCGCTGCGTCGT

consensusID : consensus_8983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [TCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAAAAGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAAGTGGCCTTGCTATTATCAAGTTTGTATTATTGGACGCACTGTACTAACTGGTCACCGATAT]

[+] EMBL CD095749             [TCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAAAAGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAAGTGGCCTTGCTATTATCAAGTTTGTATTATTGGACGCACTGTACTAACTGGTCACCGATAT]




>consensus_8983#1
TCTGAAATTGATGAGATCGAGGGAACAGCAGATGTGGTAGTAAAAAAGACGAAACCCCTT
GGGAACGTGGTCTCCGTTTGGCACGTGAAGTGGCCTTGCTATTATCAAGTTTGTATTATT
GGACGCACTGTACTAACTGGTCACCGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8983#0      TGTGCAGTTATTTCGGCACTTCATGGTCTTGAAAATGATCACCATGAACAACTGGATTTT 60
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      GAGGACGAGAATTTCCCAATAAACCCTTGGGAGACAGAACTACTTTCTTTAAAGAATAAT 120
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      AAGAGAGAGTATCATGAAAGTTCAGCTTCCTCTTCAAGTTCAGAAAGTTCTGAGTCAAGT 180
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      CCCTATGATGAAGGTGAAATGAGAAGTAGTGACGAGTCGGAGTTCAGCAAAGACGAACAG 240
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      AGTTCCGAAGAAGGAGAAGTGCAATCTGAAATTGATGAGATCGAGGGAACAGCAGATGTG 300
consensus_8983#1      ------------------------TCTGAAATTGATGAGATCGAGGGAACAGCAGATGTG 36
                                              ************************************

consensus_8983#0      GTAGTAAAAAAGGACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAA-CGTTT 359
consensus_8983#1      GTAGTAAAAAAG-ACGAAACCCCTTGGGAACGTGGTCTCCGTTTGGCACGTGAAGTGGCC 95
                      ************ *****************************************  *   

consensus_8983#0      AGAACGTGCAAAAGCTTTAAAGGCTAAGGAAAAAGATCTCGTTGAAAAGCG-TATGAATT 418
consensus_8983#1      TTGCTATTATCAAGTTTGTATTATTGGACGCACTGTACTAACTGGTCACCGATAT----- 150
                            *    *** **  *    *      *  *  **   **   * ** ***     

consensus_8983#0      TACCGGTACCCGCACCAGTGGTGGATAAAAAAACCGAAACTCCTGTAGAAGATGATTTTT 478
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      TGTGGCCTTGTTATTATCAAGTTTGTATTATTGGACGCACTGAACTAACTGGTCACCGAT 538
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      ATCTTCCGGAGGATATTCTTCCTCCGAGTGCTAAAGAAACAGCAGAATGGCGAAGAAGAG 598
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      TTACCAAACATCGTCGTAGTCGAAGTACTAGTCGACGTTTTTCATCTGCGTCATCATCAT 658
consensus_8983#1      ------------------------------------------------------------
                                                                                  

consensus_8983#0      CCTCTGTCTCATCATCGNCAAAAAGCTCTTCTCGTAGTTCCGCTGCGTCGT 709
consensus_8983#1      ---------------------------------------------------