cluster # 8997

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Schistosoma mansoni
cluster # 8997 cluster # 8997 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8997#0 length = 723 sequences # 6

consensus_8997#1 length = 331 sequences # 1
consensus_8997#2 length = 290 sequences # 1

consensusID : consensus_8997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 723
fasta sequence

                              [TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCTGGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATTGGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTACCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATATCA]

[-] EMBL CD147840             [TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCTGGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATTGGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACC                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD147297             [                                                                                                                                                                                                                  AAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGT                                                                                                                                                                           ]
[+] EMBL CD193183             [                                                                                                                                                                                                                        CCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTACCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATATCA]
[+] EMBL CD162631             [                                                                                                                                                                                                                                              CTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAA                                                                                                                                                                                 ]
[+] EMBL BG931093             [                                                                                                                                                                                                                                                                                                                                                                  GTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGA                                                                                                                                                                                              ]
[-] EMBL BG931876             [                                                                                                                                                                                                                                                                                                                                                                                             tCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTATTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTACCATTCCCTAACGAC                                                ]




>consensus_8997#0
TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCT
GGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATT
GGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATT
GATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACT
AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCA
GAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGAC
TACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGT
GGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGC
CATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTC
CATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTA
CCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTA
CCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATA
TCA

consensusID : consensus_8997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [ATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGNGTTGTTCAAGGCGTACCANAAGACAAGNTCGA]

[+] EMBL CD194115             [ATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGNGTTGTTCAAGGCGTACCANAAGACAAGNTCGA]




>consensus_8997#1
ATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGT
TCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTG
GTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAG
TCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATAT
TGTAGCTAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGNG
TTGTTCAAGGCGTACCANAAGACAAGNTCGA

consensusID : consensus_8997#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [AGTCTAAAGTTCCCTTGAAGTGAGTTTTCTTCCACTTTTTATCGTCCAGGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGATAACGAGTCAGAAGATCAGAAGTATGTTTTTGATTCTAGATTCTTAGTAAGCTCCTGCTTTTGAATATATAACAGCCCCACTGGCGAATCACGTAGAAATTTTGTAGCTCCAAGTCAACCTGACCTTAAATGAGATACAATTTACGTCTTAATAAACACAATCACTGTCTATATTTGTAATACGA]

[+] EMBL CD189171             [AGTCTAAAGTTCCCTTGAAGTGAGTTTTCTTCCACTTTTTATCGTCCAGGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGATAACGAGTCAGAAGATCAGAAGTATGTTTTTGATTCTAGATTCTTAGTAAGCTCCTGCTTTTGAATATATAACAGCCCCACTGGCGAATCACGTAGAAATTTTGTAGCTCCAAGTCAACCTGACCTTAAATGAGATACAATTTACGTCTTAATAAACACAATCACTGTCTATATTTGTAATACGA]




>consensus_8997#2
AGTCTAAAGTTCCCTTGAAGTGAGTTTTCTTCCACTTTTTATCGTCCAGGTACAATATAG
GCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGATAACGAGTCAGAAGA
TCAGAAGTATGTTTTTGATTCTAGATTCTTAGTAAGCTCCTGCTTTTGAATATATAACAG
CCCCACTGGCGAATCACGTAGAAATTTTGTAGCTCCAAGTCAACCTGACCTTAAATGAGA
TACAATTTACGTCTTAATAAACACAATCACTGTCTATATTTGTAATACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8997#0      TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCT 60
consensus_8997#1      ------------------------------------------------------------
consensus_8997#2      ------------------------------------------------------------
                                                                                  

consensus_8997#0      GGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATT 120
consensus_8997#1      ------------------------------------------------------------
consensus_8997#2      ------------------------------------------------------------
                                                                                  

consensus_8997#0      GGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATT 180
consensus_8997#1      -----------------------------------ATACGAATCGTTCATTTTAGAAATT 25
consensus_8997#2      ------------------------------------------------AGTCTAAAGTTC 12
                                                                      * * ** *  * 

consensus_8997#0      GATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACT 240
consensus_8997#1      GATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACT 85
consensus_8997#2      CCTTG--AAGTGAGTTTTCTTCCACTTTTTATCGTCC-----AGGTACAATATAGGCACT 65
                        * *  * *  *    * ** ***  * **  ** *     * ****************

consensus_8997#0      AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCA 300
consensus_8997#1      AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCA 145
consensus_8997#2      AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGA-TAACGAGTCAGAAGA-TCA 123
                      **************************************** *************** ***

consensus_8997#0      GAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGAC 360
consensus_8997#1      GAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGAC 205
consensus_8997#2      GAAGTATGTTTTTGATTCTAGATT--CTTAGTAAGCTCCTGCTT--TTGA----ATATAT 175
                      ***      **   *      **    ***** **       **  ****     *  * 

consensus_8997#0      TACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGT 420
consensus_8997#1      TACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGT------TTCCCCC 259
consensus_8997#2      AACAGCCCCACTGGCGAATCACGTA---GAAATTTTGTAGCTCCAAG--TCAACCTGACC 230
                       **    *** * **   *  * *    ***** ********  *               

consensus_8997#0      GGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGC 480
consensus_8997#1      TCAAAT-TCTCTTTGTC--ATACTACCATCAGATGGTAATTGNGTTGTTCA-AGGCGTAC 315
consensus_8997#2      TTAAAT-GAGATACAATTTACGTCTTAATAA----ACACAATCACTGTCTATATTTGTAA 285
                        * **     *       *       **        *       ***  *     *   

consensus_8997#0      CATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTC 540
consensus_8997#1      CANAAGACAAGNTCGA-------------------------------------------- 331
consensus_8997#2      TACGA------------------------------------------------------- 290
                       *                                                          

consensus_8997#0      CATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTA 600
consensus_8997#1      ------------------------------------------------------------
consensus_8997#2      ------------------------------------------------------------
                                                                                  

consensus_8997#0      CCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTA 660
consensus_8997#1      ------------------------------------------------------------
consensus_8997#2      ------------------------------------------------------------
                                                                                  

consensus_8997#0      CCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATA 720
consensus_8997#1      ------------------------------------------------------------
consensus_8997#2      ------------------------------------------------------------
                                                                                  

consensus_8997#0      TCA 723
consensus_8997#1      ---
consensus_8997#2      ---