These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1094 fasta sequence [GATAGAAGAAATTTATGTCTGATACTGTAGTCATGTATTCAGGGCTGTCAGCTAGAGAAGCCTTTTCTTCATCCGTCATGTTCACAGGCATGATTTTTCGACTGTACATTCTCATCTTTCCTCGTAAAGTTGATGAAACTATGCTTTTATAGGTTTTATTAACTGCGCCTTTGGGACAGGGAATTTTTTTAGTCCTTAGGGCTTTATCTATTGCATTAACCAACCATGAAAGGAATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACTGCCTGTAAGAATTCATGAGGTGAAACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTTTCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGGTAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGACCTACAACGCCAGGATAATATGTAAGACCATTGTATGCTCTGACCATTTTCGAATAACTGTCCAAAGTAAGTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAATGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCAC-GACCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACACCTGCTCTTCATCTGACTCTTCACTACGCTTGATCCTTTTTGAGGATCTTTTATGGGCTTCTTCATGCTTCCTTTTGTGTCCAGAAACTGAAGAAACTGAATGAGGTAGAAACGATAGTGAAGACATCTAAGTAGCGCATATATTGACG] [+] EMBL CD065816 [GATAGAAGAAATTTATGTCTGATACTGTAGTCATGTATTCAGGGCTGTCAGCTAGAGAAGCCTTTTCTTCATCCGTCATGTTCACAGGCATGATTTTTCGACTGTACATTCTCATCTTTCCTCGTAAAGTTGATGAAACTATGCTTTTATAGGTTTTATTAACTGCGCCTTTGGGACAGGGAATTTTTTTAGTCCTTAGGGCTTTATCTATTGCATTAACCAACCATGAAAGGAATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACTGCCTGTAAGAATTCATGAGGTGAAACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTTTCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGGTAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGAACTACAACGCCA ] [-] EMBL CD065832 [ AAAGGAATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACTGCCTGTAAGAATTCATGAGGTGAAACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTTTCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGGTAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGACCTACAACGCCAGGATAATATGTAAGACCATTGTATGCTCTGACCATTTTCGAATAACTGTCCAAAGTAAGTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAATGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGG ATATGCA ] [+] EMBL CD127411 [ TTTTGTTATCCAAGAAAT ATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGACCTACAACGCCAGGATAATATGTAAGACCATTGTATGCTCTGACCATTTTCGAATAACTGTCCAAAGTAAGTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAATGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCAC GACCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACA ] [+] EMBL CD189344 [ AAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCACTTATCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACACCTGCTCTTCATCTGACT ] [+] EMBL CD148037 [ CCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACACCTGCTCTTCATCTGACTCTTCACTACGCTTGATCCTTTTTGAGGATCTTTTATGGGCTTCTTCATGCTTCCTTTTGTGTCCAGAAACTGAAGAAACTGAATGAGGTAGAAACGATAGTGAAGACATCTAAGTAGCGCATATATTGACG] consensusID : consensus_8999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 780 fasta sequence [GAGCCTTATTCGGCACGAGGGCTTCTCTAGCTGACAGCCCTGAATACATGACTACAGTATCAGACATAAATTTCTTCTATCTTACGTGTGACTTACCTCCACCTCCATTATATCTAGATGAATTTAAGGAAAATATCATTCCACAAGTTTCATTAGCTACACTTCTTTCAAAATTTAACGGAGTTACAGAAAAGGAATACAAGACTCATCGTGATTCTACGTTGCGTCGATTTGAGCTTCGTCGACTTCCTCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAATCCAACGATAGTTAACTTCCCCATTAAAAGTATTGATTTCGGTGAATTGTTGGCCCCAGAATTCCGAGCTAAACATCGGTATACTACTTACGACTTGGTAGCCAATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTACATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCACAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCGTCCTTTTTT-GTTGCTTTTGTCAATAATATGAAT] [+] EMBL CD081527 [GAGCCTTATTCGGCACGAGGGCTTCTCTAGCTGACAGCCCTGAATACATGACTACAGTATCAGACATAAATTTCTTCTATCTTACGTGTGACTTACCTCCACCTCCATTATATCTAGATGAATTTAAGGAAAATATCATTCCACAAGTTTCATTAGCTACACTTCTTTCAAAATTTAACGGAGTTACAGAAAAGGAATACAAGACTCATCGTGATTCTACGTTGCGTCGATTTGAGCTTCGTCGACTTCCTCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAATCCAACGATAGTTAACTTCCCCATTAAAAGTATTGATTTCGGTGAATTGTTGGCCCCAGAATTCCGAGCTAAACATCGGTATACTACTTACGACTTGGTAGCCAATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTACATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCACAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCGTCCTTTTTT GTTGCTTTTGTCAATAATATGAA ] [-] EMBL CD075350 [ CAAGACTCATCGTGATTCTACGTTGCGTCGATTTGAGCTTCGTCGACTTCCTCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAATCCAACGATAGTTAACTTCCCCATTAAAAGTATTGATTTCGGTGAATTGTTGGCCCCAGAATTCCGAGCTAAACATCGGTATACTACTTACGACTTGGTAGCCAATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTACATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCACAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCGTCCTTTTTT GTTGCTTTTGTCAATAATATGAAT] [+] EMBL SMAA40616 [ GATGATACCCCTTAGTGAAANTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCATCCTTTTTTGGTTGCTTTTGTCAATAATATAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8999#0 GATAGAAGAAATTTATGTCTGATACTGTAGTCATGTATTCAGGGCTGTCAGCTAGAGAAG 60 consensus_8999#1 ---------------------------------------GAGCCTTATTCGGCACGAGGG 21 ** * * * * * consensus_8999#0 CCTTTTCTTCATCCGTCATGTTCACAGGCATGATTTTTCGACTGTACATTCTCATCTTTC 120 consensus_8999#1 C---TTCTCTAGCTGACAGCCCTGAATACATGACTACAGTATCAGACATAAATTTCTTCT 78 * **** * * * ** * ***** * * **** **** consensus_8999#0 CTCGTAAAGTTGATGAAACTATGCTTTTATAGGTTTTATTAACTGCGCCTTTGGGACAGG 180 consensus_8999#1 ATCTTACGTGTGACTTACCTCCACCTCCAT---TATATCTAGATGAATTTAAGGAAAATA 135 ** ** *** * ** * * ** * * ** ** * ** * * consensus_8999#0 GAATTTTTTTAGTCCTTAGGGCTTTATCTATTGCATTAACCAAC-------CATGAAAGG 233 consensus_8999#1 TCATTCCACAAGTTTCATTAGCTACACTTCTTTCAAAATTTAACGGAGTTACAGAAAAGG 195 *** *** *** * * ** ** * *** ** ***** consensus_8999#0 AATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACT 293 consensus_8999#1 AATACAA--GACTCATCGTGATT--CTACGTTGCGTCGATTTGAGCTTCGTCG-ACTTCC 250 *** *** * ** * ** * * * * ** *** ** * * ** * consensus_8999#0 GCCTGTAAGAATTCATGAGGTGAA-ACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTT 352 consensus_8999#1 TCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAA 310 *** ***** * * **** * ** *** *** * *** * ** consensus_8999#0 TCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGG 412 consensus_8999#1 TCCAACGA---TAGTTAACTTCCCCATTAAAAGTAT----TGATTTC----GGTGAATTG 359 ** ** * * * ** ** * ***** ** **** ** * * * consensus_8999#0 TAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAG 472 consensus_8999#1 TTGGCCCCAGAA--TTCCGAGCT---AAACATCGGTATACTACTTAC-GACTTGGTAGCC 413 * ** * ** ** ** * * * ** * * * ** ** ** * consensus_8999#0 CATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATAT-TATTGAG---ACCTACAA 528 consensus_8999#1 AATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTA 473 ** * ****** * * ** * ** * ** ** * ** * * consensus_8999#0 CGCCAGGATAATATGTAAGACC----ATTGTATGCTCTGACCATTTTCGAATAACTGTCC 584 consensus_8999#1 CATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCA 533 * * * ** * ** * * * ** ** **** ** * consensus_8999#0 AAAGTAA-GTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAA 643 consensus_8999#1 CAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAA-GTCTAT--- 589 * * * * * * *** * * * *** * ** *** **** consensus_8999#0 TGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATT 703 consensus_8999#1 --ACCTAATCCAAGCTTCGTAG---------AACCTGTAAAAGTAACAGATGAGGAGATT 638 *** * ** ** ** ** * ***** * * * *** consensus_8999#0 CAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCACG 763 consensus_8999#1 GATGGAGAAAC-------TAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGC 691 * * *** * ** * * * *** * ** * * consensus_8999#0 ACCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAAC 823 consensus_8999#1 AATTAGGAAGGA------AGAGACTA--TGGATACAGATATTAA--TGAGTCACAAAACT 741 * * * *** * * *** ** * * *** *** * **** * * ** consensus_8999#0 GGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGG 883 consensus_8999#1 GATTCGTCCTTTTTTGTTGCTTTTGTCAATAATATGAAT--------------------- 780 * * **** * * ** * ** * * consensus_8999#0 GCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATA 943 consensus_8999#1 ------------------------------------------------------------ consensus_8999#0 CACCTGCTCTTCATCTGACTCTTCACTACGCTTGATCCTTTTTGAGGATCTTTTATGGGC 1003 consensus_8999#1 ------------------------------------------------------------ consensus_8999#0 TTCTTCATGCTTCCTTTTGTGTCCAGAAACTGAAGAAACTGAATGAGGTAGAAACGATAG 1063 consensus_8999#1 ------------------------------------------------------------ consensus_8999#0 TGAAGACATCTAAGTAGCGCATATATTGACG 1094 consensus_8999#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||