These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 870 fasta sequence [CTCGAGCCAANATTCGGCACGAGGGTTTAAAAAATAAACCTATAACTCCTATAGCAGCGGTTGTTTCTCTTGGGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACATATCGATCTGTACGTGGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCCTCCATTATCAACTGATATTAGACTTGACTCCACTGATAGTAAAGAACTTTTACTGATGATTGTTGAAACTCAAACTTATTTACGTCGAGTTCACGAACGGATTGAGCTGTTAGCTTCATTGCTGCAATAGAATGTATTCTTATATAGAAATTCATTTGTTTCACAGGTTATTTTTTGAGATATTTATTTAATGATTCGTTTATTATGACCATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTTACAGAAAGAAATAAGATTCTCTGCTGAAAGTTATTGTTCCAACTTTTGTTGATCAATTCTTGATCTTTGATTTCTAATCATTTATAAAGCTTTTGGGATTTTTTTTATATATCTTATTCATCGTATAAAATTGATTTTATCTATACTTTCAGTAAAAACATTTTAATACCTTATTTTGTAAAACGATTTACGTGATAATCAGTGTGCAAACATATAGACACACTGCTTTAAGCTTTTTTCCATCAGCTAACCTATTTTTTTTATTTCGATTCCTATTTCCAATGTGTTAAGATCATCAATTGATACATTTGAAAAAAAAATCACTTTTTA] [+] EMBL CD079694 [CTCGAGCCAANATTCGGCACGAGGGTTTAAAAAATAAACCTATAACTCCTATAGCAGCGGTTGTTTCTCTTGGGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACATATCGATCTGTACGTGGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCCTCCATTATCAACTGATATTAGACTTGACTCCACTGATAGTAAAGAACTTTTACTGATGATTGTTGAAACTCAAACTTATTTACGTCGAGTTCACGAACGGATTGAGCTGTTAGCTTCATTGCTGCAATAGAATGTATTCTTATATAGAAATTCATTTGTTTCACAGGTTATTTTTTGAGATATTTATTTAATGATTCGTTTATTATGACCATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTTACAGAAAGAAATAAGATTCTCTGCTGAAAGTTATTGTTCCAACTTTTGTTGATCAATTCTTGATCTTTGATTTCTAATCATTTATAAAGCTNTTGGGATTNTTTTTATATATCTTATTCATCGTATAAAATTGATTNTATCTATACTNTCAG ] [-] EMBL CD073628 [ CGATTAAGTCCTCCATTATCAACTGATATTAGACTTGACTCCACTGATAGTAAAGAACTTTTACTGATGATTGTTGAAACTCAAACTTATTTACGTCGAGTTCACGAACGGATTGAGCTGTTAGCTTCATTGCTGCAATAGAATGTATTCTTATATAGAAATTCATTTGTTTCACAGGTTATTTTTTGAGATATTTATTTAATGATTCGTTTATTATGACCATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTTACAGAAAGAAATAAGATTCTCTGCTGAAAGTTATTGTTCCAACTTTTGTTGATCAATTCTTGATCTTTGATTTCTAATCATTTATAAAGCTTTTGGGATTTTTTTTATATATCTTATTCATCGTATAAAATTGATTTTATCTATACTTTCAGTAAAAACATTTTAATACCTTATTTTGTAAAACGATTTACGTGATAATCAGTGTGCAAACATATAGACACACTGCTTTAAGCTTTTTTCCATCAGCTAACCTATTTTTTTTATTTCGATTCCTATTTCCAATGTGTTAAGATCATCAATTGATACATTTGAAAAAAAAATCACTTTTTA] [-] EMBL CD073953 [ TTTACTGATGATTGTTGAAACTCAAACTTATTTACGTCGAGTTCACGAACGGATTGAGCTGTTAGCTTCATTGCTGCAATAGAATGTATTTTTATATAGAAATTCATTTGTTTCACAGGTTATTTTTTGAGATATTTATTTAATGATTCGTTTATTATGACCATTATTATCAAACAATTTACCATTGTTTTGCATACGGACTTCCATCAGATTTTACAGAAAGAAATAAGATTTTTTGCTGAAAGTTATTGTTCCAACTTTTGTTGATCAATTCTTGATCTTTGATTTTTAATCATTTATAAAGCTTTTGGGATTTTTTTTATATATCTTATTCATCGGATAAAATTGATTTTATTTATACTTTCAGTAAAAACATTTTAATACCTTATTTTGTAAAACGATTTACGTGATAATCAGTGGGCAAACATATAGACACCCTGCTTTAAGCTTTTTTCCATCAGCTAACCTATTTTTTTTATTTCGATTCCTATTTCCAATGTGTTAAGATCATCAATTGATACA TTGGAAAAAAAATCACTTTT ] consensusID : consensus_9009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence [TCTATTTCTTCCGTCTCTGAGCTTGATCGTGAAACCCAATCTTCAAAATCATCAACACTTTCAACTTCTCAATCTATTTTAAATTTTTTCTCAAATGCTCAAGGATTGTTAATAGGTAGTGAAACAAGTACCAACCTTTCAACATCTGACACTGAATTAAATAATCCATTTGAAAAAATGCCTTCAGATAACGAACATCCAATTTGGAAAGCTGCTCGGGCTTCAAGCGCTGCACCGACATATTTTAGACCTTGTGGGCGTTTTTTGGATGGTGGATTAATTTCAAATAATCCAACATTAGATGTTTTAACAGAAATTCAAGAATTACAACTTTTACAACGTTTAAAAAATAAACCTATAACTCCTATAGCAGCGGTTGTTTCTCTTGGGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACATATCGATCTGTACGTGGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCCTCCATTATCAACTGATATTAGACTTGACTCCACTGATAGTAAAGAACTTTTACTGATGATTGTTGAAACTCANACTT] [+] EMBL CD079351 [TCTATTTCTTCCGTCTCTGAGCTTGATCGTGAAACCCAATCTTCAAAATCATCAACACTTTCAACTTCTCAATCTATTTTAAATTTTTTCTCAAATGCTCAAGGATTGTTAATAGGTAGTGAAACAAGTACCAACCTTTCAACATCTGACACTGAATTAAATAATCCATTTGAAAAAATGCCTTCAGATAACGAACATCCAATTTGGAAAGCTGCTCGGGCTTCAAGCGCTGCACCGACATATTTTAGACCTTGTGGGCGTTTTTTGGATGGTGGATTAATTTCAAATAATCCAACATTAGATGTTTTAACAGAAATTCAAGAATTACAACTTTTACAACGTTTAAAAAATAAACCTATAACTCCTATAGCAGCGGTTGTTTCTCTTGGGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACATATCGATCTGTACGTGGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCCTCCATTATCAACTGATATTAGACTTGACTCCACTGATAGTAAAGAACTTTTACTGATGATTGTTGAAACTCANACTT] [+] EMBL CD060696 [ GTCGTATTCTACTCGAAATTGCAACCATGTCATATGGTCTGGTTGTTGATCGTGCTATTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCTATTAAGTCC ] consensusID : consensus_9009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [ATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTTACAGAAAGAAATAAGATTCTCTGGTGAAAGTTATTGNCCCAACTGGGGNTGATCAATTCTTGNATCTTTGATTTCTAATCATTTATAAAGNCTGGGGGGATTCTTTTTATNTATCTTATCCATCGCTATAAAATTGNATTCTATCTTATACTTCCAGCTAAAAACATTTNACTACCTTATTNTGNAAACACGGATTTACGTGTATAATCAGTGTGCAAACATATA] [+] EMBL SM784 [ATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTTACAGAAAGAAATAAGATTCTCTGGTGAAAGTTATTGNCCCAACTGGGGNTGATCAATTCTTGNATCTTTGATTTCTAATCATTTATAAAGNCTGGGGGGATTCTTTTTATNTATCTTATCCATCGCTATAAAATTGNATTCTATCTTATACTTCCAGCTAAAAACATTTNACTACCTTATTNTGNAAACACGGATTTACGTGTATAATCAGTGTGCAAACATATA] consensusID : consensus_9009#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [CNAGAGGATTTCCGTTTCTCTTGCGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACATATCGATCTGTACGCGGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCC] [+] EMBL CD060691 [CNAGAGGATTTCCGTTTCTCTTGCGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACATATCGATCTGTACGCGGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCC] consensusID : consensus_9009#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [ATTTATACCATTATTATCAAACAATTTCCATTGTTCTGCATACGTACTTCCATCAGATTTTTACAGAAAGAAATAAGATTCTCTGCCTGAAAGTTATTGTTCCAACTTTTTGTTGATCATTCTGATCTTTGATTTCTAATCATTTATAAAGCTTTGGATTTTTTATATATCTATCATCGATAAATG] [+] EMBL SMAA69236 [ATTTATACCATTATTATCAAACAATTTCCATTGTTCTGCATACGTACTTCCATCAGATTTTTACAGAAAGAAATAAGATTCTCTGCCTGAAAGTTATTGTTCCAACTTTTTGTTGATCATTCTGATCTTTGATTTCTAATCATTTATAAAGCTTTGGATTTTTTATATATCTATCATCGATAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 CTCGAGCCAANATTCGGCACGAGGGTTTAAAAAATAAACCTATAACTCCTATAGCAGCGG 60 consensus_9009#1 ------------------------------------------------------------ consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 TTGTTTCTCTTGGGACTGGACGGTTGCCTGTAATGCCTGTAGAGACAGTAGATGTATTTC 120 consensus_9009#1 ------------------------------------------------------------ consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 GTCCACAAAATATTATGGAAACATATCGATCTGTACGTGGTTTCGGATTTCTTGGTCGTA 180 consensus_9009#1 -------TCTATTTCTTCCGTCTCTGAGCTTGATCGTGAAACCCAATCTTCAAAATCATC 53 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 TTCTAGTCGAAATTGCAACCATGTCAGATGGTCGGGTTGTTGATCGTGCTAGTGCATGGT 240 consensus_9009#1 AACACTTTCAACTTCTCAATCTATTTTAAATTTTTTCTCAAATGCTCAAGGATTGTTAAT 113 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 GTGGTTCACTTGGAGTACCATTCTTTCGATTAAGTCCTCCATTATCAACTGATATTAGAC 300 consensus_9009#1 AGGTAGTGAAACAAGTACCAACCTTTCAACATCTGACACTGAATTAAATAATCCATTTGA 173 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 TTGACTCCACTGATAGTAAAGAACTTTTACTGATGATTGTTGAAACTCAAACTTATTTAC 360 consensus_9009#1 AAAAATGCCTTCAGATAACGAACATCCAATTTGGAAAGCTGCTCGGGCTTCAAGCGCTGC 233 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 GTCGAGTTCACGAACGGATTGAGCTGTTAGCTTCATTGCTGCAATAGAATGTATTCTTAT 420 consensus_9009#1 ACCGACATATTTTAGACCTTGTGGGCGTTTTTTGGATGGTGGATTAATTTCAAATAATCC 293 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ----------------------------------------------------------AT 2 consensus_9009#0 ATAGAAATTCATTTGTTTCACAGGTTATTTTTTGAGATATTTATTTAATGATTCGTTTAT 480 consensus_9009#1 AACATTAGATGTTTTAACAGAAATTCAAGAATTACAACTTTTACAACGTTTAAAAAATAA 353 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 -------ATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTT 53 consensus_9009#4 TTATACCATTATTATCAAACAATTT-CCATTGTTCTGCATACGTACTTCCATCAGATTTT 61 consensus_9009#0 TATGACCATTATTATCAAACAATTTACCATTGTTCTGCATACGTACTTCCATCAGATTTT 540 consensus_9009#1 ACCTATAACTCCTATAGCAGCGGTTGTTTCTCTTGGGACTGGACGGTTGCCTGTAATGCC 413 consensus_9009#3 -----------CNAGAG-GATTTCCGTTTCTCTTGCGACTGGACGGTTGCCTGTAATGCC 48 * * ** * * ** * * ** consensus_9009#2 -ACAGAAAGAAATAAGATTCTCTGG-TGAAAGTTATTGNCCCAACTGGG-GNTGATCAAT 110 consensus_9009#4 TACAGAAAGAAATAAGATTCTCTGCCTGAAAGTTATTGTTCCAACTTTTTGTTGATCA-T 120 consensus_9009#0 -ACAGAAAGAAATAAGATTCTCTGC-TGAAAGTTATTGTTCCAACTTTT-GTTGATCAAT 597 consensus_9009#1 TGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACAT---ATCGATCTGT 470 consensus_9009#3 TGTAGAGACAGTAGATGTATTTCGTCCACAAAATATTATGGAAACAT---ATCGATCTGT 105 *** * * * * * * ** **** *** **** * consensus_9009#2 TCTTGNATCTTTGATTTCT-AATCATTTATAAAGNCTGGGGGGATTCTTTTTATNTA-TC 168 consensus_9009#4 TCT--GATCTTTGATTTCT-AATCATTTATAAAGCTTTGG---ATTTTTTATATATC-TA 173 consensus_9009#0 TCTT-GATCTTTGATTTCT-AATCATTTATAAAGCTTTTGGG-ATTTTTTTTATATA-TC 653 consensus_9009#1 ACGT-GGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTC 529 consensus_9009#3 ACGC-GGTTTCGGATTTCTTGGTCGTATTCTAGTCGAAATTGCAACCATGTCAGATGGTC 164 * * * ******* ** * * * * * * * * consensus_9009#2 TTATCCATCGCTATAAAATTGNATTCTATCTTATACTTCCAGCTAAAAACATTTNACTAC 228 consensus_9009#4 TCATCGATAAATG----------------------------------------------- 186 consensus_9009#0 TTATTCATCG-TATAAAATTGATTTT--ATCTATACTTTCAG-TAAAAACATTTTAATAC 709 consensus_9009#1 GGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAA 589 consensus_9009#3 GGGTTGTTGATCGTGCTAGTGCATGGTGTGGTTCACTTGGAGTACCATTCTTTCGATTAA 224 * * consensus_9009#2 CTTATTNTGNAAACACGGATTTACGTGTATAATCAGTGTGCAAACATATA---------- 278 consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 CTTATTTTGTAAAAC--GATTTACGTG-ATAATCAGTGTGCAAACATATAGACACACTGC 766 consensus_9009#1 GTCCTCCATTATCAACTGATATTAGACTTGACTCCACTGATAGTAAAGAACTTTTACTGA 649 consensus_9009#3 GTCC-------------------------------------------------------- 228 consensus_9009#2 ------------------------------------------------------------ consensus_9009#4 ------------------------------------------------------------ consensus_9009#0 TTTAAGCTTTTTTCCATCAGCTAACCTATTTTTTTTATTTCGATTCCTATTTCCAATGTG 826 consensus_9009#1 TGATTGTTGAAACTCANACTT--------------------------------------- 670 consensus_9009#3 ------------------------------------------------------------ consensus_9009#2 -------------------------------------------- consensus_9009#4 -------------------------------------------- consensus_9009#0 TTAAGATCATCAATTGATACATTTGAAAAAAAAATCACTTTTTA 870 consensus_9009#1 -------------------------------------------- consensus_9009#3 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||