These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGCCAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTCTTTTGCTTGGATTCGAAATAATTAACC] [+] EMBL CD060931 [GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGCCAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTCTTTTGCTTGGATTCGAAATAATTAACC] consensusID : consensus_9014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 467 fasta sequence [GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT-AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG-AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG-AACTGGCGGACGGACGGCGCAATTTACTTCAC-ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATG-AAAGTAGTTAATCCAAATACTT-CCA-G-CGTCAACCCT-CATTTTGGTCATCCGTAGCTCGCTCTTCTG-CCGCCTCTGGTTGCTTAAGCATGCATG] [+] EMBL CD158191 [GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGCCTGTTTGGTCTAGGGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG AACTGGCGGACGGACGGCGCAATTTACTTCAC ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATG AAAGTAGTTAATCCAAATACTT CCAGG CGTCAACCCT CATTTTGGTCATCCGTAGCTCGCTCTTCTG CCGCCTCTGGTTGCTTAAGCATGCATG] [+] EMBL CD158012 [ AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAAACTGGCGGACGGACGGCGCAATTTACTTCACAATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGACAAAACTTGAACCTGTCCTTACTAAGCCTATATGTCGTACTACTTTTGAGGATAAGACCAGACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAAGTAG TAATNCAAATACTT GCA GCCGTCAACCCT NATTTTGGTCATNCGTAGCTCGCTCTTGGGCCCGCCTCTTGGTGCTTAAGCATGCAT ] [+] EMBL CD158009 [ AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAAACTGGCGGACGGACGGCGCAATTTACTTCAC ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGATACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGAACAAACCAATTAAGGA GCCAATGAATCTTCTGATGCTTCTGTGATG AAAGTAGNTAATTCAAATACTTNNCA G CGTCAACCCTNNATTTTGGTCATTCGTAGCTCGCTCTCCTG CCGCTTTTGGTTGCTTAAGCATGCATG] [+] EMBL CD158240 [ AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG AACTGGCGGACGGACGGCGCAATTTACTTCAC ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATG AAAGTAGTTAATCCAAATACTTNCCA G CGTCACCCNT CATTNTGGTCATCCGTAGCTCGCTCTTCTG CCCGCTCTGGNTGCTTNAGCATGCATG] [+] EMBL CD157934 [ AAGTCACATAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAGAACCTTACTTTAAATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAGAAAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAAACTGGCGGACGGACGGCGCAATTAACTTAACAATGGCTGTGTCGATGTGTGCACCAac ] [+] EMBL CD158013 [ AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG AACTGG ] [+] EMBL CD157999 [ AAGTCACAAGGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGAACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG A ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9014#0 GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAA 60 consensus_9014#1 -------------------GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAA 41 * ****** ****************************** consensus_9014#0 CAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATT 120 consensus_9014#1 CAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATT 101 ************************************************************ consensus_9014#0 CTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAA 180 consensus_9014#1 CTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCTGCTGACTTGTCTTCAGTTGAA 161 ************************************** ********************* consensus_9014#0 AGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTG 240 consensus_9014#1 AGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTG 221 ************************************************************ consensus_9014#0 TCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAA 300 consensus_9014#1 TCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAA 281 ************************************************************ consensus_9014#0 CCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAG 360 consensus_9014#1 CCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAG 341 ************************************************************ consensus_9014#0 GAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGC 420 consensus_9014#1 GAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGC 401 ************************************************************ consensus_9014#0 CAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTC 480 consensus_9014#1 --GTCA--ACCCTCATTTTGGTCATCCGTAGCTCGCTCTTCTGCCGCCTCTGGTTG---C 454 * ** * * * ** ** * ***** ** * ** * consensus_9014#0 TTTTGCTTGGATTCGAAATAATTAACC 507 consensus_9014#1 TTAAGCATGCATG-------------- 467 ** ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||