These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1012 fasta sequence [ATTTGATCCCTGGAATCCTTTGGTTTTGTACGTTACAGAACTTTATGTAAATAGCTTTTTAAACCTGGATTTCACAAATCATGTTAACTGAAAAAAAGTCGGGAACCAACTTTACCTGGTTCACAGTCGTCTGAACATCAGACAGATTATGGTCCCAGCACGACCGAAACAACTGATCGATCTGCAAACAATCCTGGGCCTTATCTAGATGGCACCGTACGTAAAGCTGATGGAATGAGCGATAGTGATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAGGAAGATGCTGCTGATGAGGAAAAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGACACACTGTTACTCCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTTCACACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTCTGAATTATAGGACAGTGCAACTCCTAATGAAGAGAATCGATTGGAGGAAGAGGACAGTATAAATACTGGCAATCGAATTACAA] [+] EMBL CD062290 [ATTTGATCCCTGGAATCCTTTGGTTTTGTACGTTACAGAACTTTATGTAAATAGCTTTTTAAACCTGGATTTCACAAATCATGTTAACTGAAAAAAAGTCGGGAACCAACTTTACCTGGTTCACAGTCGTCTGAACATCAGACAGATTATGGTCCCAGCACGACCGAAACAACTGATCGATCTGCAAACAATCCTGGGCCTTATCTAGATGGCACCGTACGTAAAGCTGATGGAATGAGCGATAGTGATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAGGAAGATGCTGCTGATGAGGAAAAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTAAGGACgggt ] [+] EMBL CD198612 [ GATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAGGAAGATGCTGCTGATGAGGAAGAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGACACACTGTTACTCCGAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAG ] [-] EMBL CD063060 [ CAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGACACACTGTTACTCCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACatga ] [+] EMBL CD125145 [ CCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTTCACACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTCTGAA ] [-] EMBL CD161973 [ TGTTCGCAAAGAACTAGTTCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCTTAAATATTCAAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTCTGAATTATAGGACAGTGCAACTCCTAATGAAGAGAATCGATTG ] [-] EMBL CD161972 [ CTAAATATTCTAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTGTGAATTATAGGACAGTGCAACTCCTAATGAAGAGAATCGATTGGAGGAAGAGGACAGTATAAATACTGGCAATCGAATTACAA] consensusID : consensus_9020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [ACTCTTACGTACACCATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTCCACACCCACACTCAGTCCCTTGTTCGCAAAGAACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAGAGACTCAACTATCTAGTCGCAAAAGCTCATCG] [-] EMBL CD065286 [ACTCTTACGTACACCATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTCCACACCCACACTCAGTCCCTTGTTCGCAAAGAACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAGAGACTCAACTATCTAGTCGCAAAAGCTCATCG] consensusID : consensus_9020#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [TTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATACCCAACAAAACCGATACACCTCCATTACGATGTCTCTCTGTGTTTCCGCACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTGCCGATCCACCCAGACCGGGCCGGCCCAATCA] [-] EMBL CD200787 [TTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATACCCAACAAAACCGATACACCTCCATTACGATGTCTCTCTGTGTTTCCGCACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTGCCGATCCACCCAGACCGGGCCGGCCCAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9020#0 ATTTGATCCCTGGAATCCTTTGGTTTTGTACGTTACAGAACTTTATGTAAATAGCTTTTT 60 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 AAACCTGGATTTCACAAATCATGTTAACTGAAAAAAAGTCGGGAACCAACTTTACCTGGT 120 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 TCACAGTCGTCTGAACATCAGACAGATTATGGTCCCAGCACGACCGAAACAACTGATCGA 180 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 TCTGCAAACAATCCTGGGCCTTATCTAGATGGCACCGTACGTAAAGCTGATGGAATGAGC 240 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 GATAGTGATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAG 300 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 GAAGATGCTGCTGATGAGGAAAAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTA 360 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 GATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACT 420 consensus_9020#1 ----------------------------------ACTCTTACGTACACCATAGCGACACT 26 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 GCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGA 480 consensus_9020#1 GCTGCAGGAAACTGCAGCAACGTTTCCAGAG----------------------------- 57 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 CACACTGTTACTCCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCT 540 consensus_9020#1 ----------------------CTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCT 95 consensus_9020#2 -----------------TTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCT 43 ************************************** consensus_9020#0 AAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATT 600 consensus_9020#1 AAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATT 155 consensus_9020#2 AAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATT 103 ************************************************************ consensus_9020#0 TCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCA 660 consensus_9020#1 TCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCA 215 consensus_9020#2 TCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCA 163 ************************************************************ consensus_9020#0 GATGTCGATGCGTTGGTAGATAAA-AACAAAGCCGATACACCTCCATTACGTTGTCTCAC 719 consensus_9020#1 GATGTCGATGCGTTGGTAGATAAA-AACAAAGCCGATACACCTCCATTACGTTGTCTCAC 274 consensus_9020#2 GATGTCGATGCGTTGGTAGATACCCAACAAAACCGATACACCTCCATTACGATGTCTCTC 223 ********************** ****** ******************* ****** * consensus_9020#0 TGTGTTTTCACACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGA 779 consensus_9020#1 TGTGTTTCCACACCCACACTCAGTCCCTTGTTCGCAAAGAACTAGTCCAGTATCTATAGA 334 consensus_9020#2 TGTGTTTCCGCACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGA 283 ******* * ***************************** ******************** consensus_9020#0 TGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGC 839 consensus_9020#1 TGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGC 394 consensus_9020#2 TGTATCATGTGCCGATCCACC--CAG--ACCGGGCCGGCCCAATCA-------------- 325 ********** ********** *** **** * * *** consensus_9020#0 CTCAGA-AGACTCAACTA-CTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCC 897 consensus_9020#1 CTCAGAGAGACTCAACTATCTAGTCGCAAAAGCTCATCG--------------------- 433 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 CGCTCAAAATCTAACCTAGCTATTCATACTTCTGAATTATAGGACAGTGCAACTCCTAAT 957 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 GAAGAGAATCGATTGGAGGAAGAGGACAGTATAAATACTGGCAATCGAATTACAA 1012 consensus_9020#1 ------------------------------------------------------- consensus_9020#2 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||