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Schistosoma mansoni
cluster # 9022 cluster # 9022       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9022#0 length = 1076 sequences # 7  
consensus_9022#1 length = 164 sequences # 1  

consensusID : consensus_9022#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1076
fasta sequence
                              [ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCCATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATCACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATGGCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATACTGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCAGCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT-TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA-TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTGATAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAGCATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTAAAGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAATATTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGATGGAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG]

[-] EMBL CD062426             [ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCCATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATCACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATGGCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATACTGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCAGCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCT  AACTCggggat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD125937             [                                                                                                                                                                                                                                                                                                                              ATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGAGTTGGGTGCAAAGAAACAGATTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD140832             [                                                                                                                                                                                                                                                                                                                               TTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATC                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD140855             [                                                                                                                                                                                                                                                                                                                                                              AATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCGTGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGTAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACGACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATC                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD140815             [                                                                                                                                                                                                                                                                                                                                                                                  TTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGTTGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGCCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATC                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD064277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGGTATACACATACGAAGTAACCGTCTCATGGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTAT                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AI068203             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTCACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTGATAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAGCATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTAAAGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAATATTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGATGGAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG]


>consensus_9022#0 ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCC ATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATC ACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATG GCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATAC TGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCA GCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTAC AGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAAT ATCTGATAGAATAAGGGTAGATAAACGAGGAAGGTTACACATACGAAGTTTCCGTCTCAT TGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGC TAGAACTCCAGCAGCAGGGTTTCACGATTGGGTGCAAAGAAACAGATTATGGACCAAGGG TATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGT TGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGT CAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTGA TAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAGC ATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTAA AGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAATA TTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGATG GAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG



consensusID : consensus_9022#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence
                              [CGAGACAGAATATGAGATTGAGGAAATCAGTGGTTTTGTAATCGATGTATTTTTGGTTTTTCGACGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAGGTTGATAGTCGATTCTATC]

[-] EMBL CD197527             [CGAGACAGAATATGAGATTGAGGAAATCAGTGGTTTTGTAATCGATGTATTTTTGGTTTTTCGACGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAGGTTGATAGTCGATTCTATC]


>consensus_9022#1 CGAGACAGAATATGAGATTGAGGAAATCAGTGGTTTTGTAATCGATGTATTTTTGGTTTT TCGACGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACA ATTTCGTGTCGTCAGATGTGAAAAGGTTGATAGTCGATTCTATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9022#0      ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCC 60
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      ATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATC 120
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      ACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATG 180
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      GCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATAC 240
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      TGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCA 300
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      GCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTAC 360
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      AGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAAT 420
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      ATCTGATAGAATAAGGGTAGATAAACGAGGAAGGTTACACATACGAAGTTTCCGTCTCAT 480
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      TGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGC 540
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      TAGAACTCCAGCAGCAGGGTTTCACGATTGGGTGCAAAGAAACAGATTATG-GACCAAGG 599
consensus_9022#1      -------------------------------------CGAGACAGAATATGAGATTGAGG 23
                                                            ** ***** **** **   ***

consensus_9022#0      GTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTG 659
consensus_9022#1      AAA---TCAGTGGTTTT------GTAATCGATGTATTTTT---GGTTTTTCGACGGGTTG 71
                        *   ****** *  *      * *** * ****  *       ** *** * ******

consensus_9022#0      TTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCG 719
consensus_9022#1      TTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCG 131
                      ************************************************************

consensus_9022#0      TCAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTG 779
consensus_9022#1      TCAGATGTGAAAAGGTTGATAGTCGATTCTATC--------------------------- 164
                      ************* *******************                           

consensus_9022#0      ATAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAG 839
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      CATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTA 899
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      AAGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAAT 959
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      ATTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGAT 1019
consensus_9022#1      ------------------------------------------------------------
                                                                                  

consensus_9022#0      GGAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG 1076
consensus_9022#1      ---------------------------------------------------------
                                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)