cluster # 9023

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Schistosoma mansoni
cluster # 9023 cluster # 9023 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9023#0 length = 843 sequences # 6

consensus_9023#1 length = 369 sequences # 2

consensusID : consensus_9023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 843
fasta sequence

                              [AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGGTGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAAACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACCACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAACAAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCGTGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGGGAG]

[+] EMBL CD122847             [AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGGTGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAAACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACCACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAACAAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCGTGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD189401             [                                                                                                                                                                                                                  AAATCCAAGAAGTGCATCTATTCGTCGAACAAGTATGAGAGAAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCGTGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGTACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGT                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD116790             [                                                                                                                                                                                                                                                                                                                                CAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGGGA ]
[-] EMBL CD117711             [                                                                                                                                                                                                                                                                                                                                                                                             TCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGGGAG]
[-] EMBL CD066712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTCGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCC                                                               ]
[-] EMBL CD165580             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAACAACACACAGTCCGCATTGAATAACGACTCTGGTCCAATAGGTGTTGTGAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTAAAAATGTCGGCACgcag                                ]




>consensus_9023#0
AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGG
TGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAA
ACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACC
ACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAAC
AAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCG
TGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACT
CAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACT
TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAA
ATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAG
CTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCA
ATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAA
CAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCC
TGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCC
TGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGG
GAG

consensusID : consensus_9023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 369
fasta sequence

                              [GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGTTATTATTAATATTTTTCACAGGTTGAAACA]

[+] EMBL CD198434             [GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGTTATTATTAATATTTTTCACAGGTTGAAACA]
[+] EMBL CD062637             [                                                                                                                 TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTG                                                                                                                                                              ]




>consensus_9023#1
GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACTCAATGGA
TCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGT
CCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCA
ATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGG
TCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCT
AATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGTTATTATTAATATTTTTCACAG
GTTGAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9023#0      AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGG 60
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      TGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAA 120
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      ACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACC 180
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      ACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAAC 240
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      AAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCG 300
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      TGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACT 360
consensus_9023#1      -------GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACT 53
                             ********************************* ******** **********

consensus_9023#0      CAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACT 420
consensus_9023#1      CAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACT 113
                      ************************************************************

consensus_9023#0      TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAA 480
consensus_9023#1      TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAA 173
                      ************************************************************

consensus_9023#0      ATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAG 540
consensus_9023#1      ATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAG 233
                      ************************************************************

consensus_9023#0      CTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCA 600
consensus_9023#1      CTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCA 293
                      ************************************************************

consensus_9023#0      ATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAA 660
consensus_9023#1      ATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGT-TATT-------AT 345
                      ******************************************     **         * 

consensus_9023#0      CAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCC 720
consensus_9023#1      TAATATTTTTCACAGGTTGAAACA------------------------------------ 369
                       ** *       **  *****  *                                    

consensus_9023#0      TGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCC 780
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      TGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGG 840
consensus_9023#1      ------------------------------------------------------------
                                                                                  

consensus_9023#0      GAG 843
consensus_9023#1      ---