These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 843 fasta sequence [AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGGTGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAAACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACCACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAACAAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCGTGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGGGAG] [+] EMBL CD122847 [AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGGTGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAAACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACCACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAACAAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCGTGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTT ] [-] EMBL CD189401 [ AAATCCAAGAAGTGCATCTATTCGTCGAACAAGTATGAGAGAAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCGTGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGTACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGT ] [+] EMBL CD116790 [ CAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGGGA ] [-] EMBL CD117711 [ TCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGGGAG] [-] EMBL CD066712 [ TTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAACAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCCTGTCGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCC ] [-] EMBL CD165580 [ CAACAACACACAGTCCGCATTGAATAACGACTCTGGTCCAATAGGTGTTGTGAGTCCATCTCCTGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCCTGTACAAAATCCTAAAAATGTCGGCACgcag ] consensusID : consensus_9023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 369 fasta sequence [GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGTTATTATTAATATTTTTCACAGGTTGAAACA] [+] EMBL CD198434 [GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACTCAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACTTACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAGCTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCAATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGTTATTATTAATATTTTTCACAGGTTGAAACA] [+] EMBL CD062637 [ TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAAATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9023#0 AGAAATTGTTGAATTACTTGTAAATTTCGGTGCAGATATATTAGCTGAAACTAGAAATGG 60 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 TGAAACAGTATTTGATATATGTGAAGATATTGAAATGCATACACGTTTGATTGAAATTAA 120 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 ACAAGAAGTAGAAAGAAAAAAATCTCAACAACAAGATTTACTTAATAAACCTGGTAAACC 180 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 ACGTGAATTAGTTCGTCGACGTAGTAGTACAAATCCAGGAAGTGCATCTATTCGTCGAAC 240 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 AAGTATGAGAGGAAAGAAAATGATCTCTTGGAAGGAAGCTAAACAAGAGGCTGAAATGCG 300 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 TGGTGTAGCTACAACATCATCAGATGAAAAGAATACATCAAAACCTCTAAGTCCTATACT 360 consensus_9023#1 -------GCTACAACATCATCAGATGAAAAGAATACATCAGAACCTCTAGGTCCTATACT 53 ********************************* ******** ********** consensus_9023#0 CAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACT 420 consensus_9023#1 CAATGGATCTACAGATCATATTCTTGAAAAATCCACAACCTATCCAGAATCCCATGGACT 113 ************************************************************ consensus_9023#0 TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAA 480 consensus_9023#1 TACTAGTCCCAAACCTATTCGTGATTCCACACGTAGTTCACATCCCGGTCATTCCTCAAA 173 ************************************************************ consensus_9023#0 ATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAG 540 consensus_9023#1 ATCTTCAATCCCACCAGTATCGTCTCCAATTTTAACTGGTGTATTAACGCATCACGGTAG 233 ************************************************************ consensus_9023#0 CTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCA 600 consensus_9023#1 CTCTTGGTCAGGCAAAGTACAACAAAATGACACTGTTACTGAAGTTAACAGTTCTACTCA 293 ************************************************************ consensus_9023#0 ATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTCAACCTACCTAGGCGCAA 660 consensus_9023#1 ATCACCTAATCTTCGTAATTCATCCAGAATGAAGGATAAGGTTTGT-TATT-------AT 345 ****************************************** ** * consensus_9023#0 CAACACACAGTCCACATTGAATAACGACTCTGGTCCAATAGGTGTTGTAAGTCCATCTCC 720 consensus_9023#1 TAATATTTTTCACAGGTTGAAACA------------------------------------ 369 ** * ** ***** * consensus_9023#0 TGTTGCAGCTCATCGTACAAGTCATGATAAAGAAAGAATTGTCAGAGTTCCGTCGGGTCC 780 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 TGTACAAAATCCTGAAAATGTCGGCACATTGACACGACGACCTCAACAAACAGAATACGG 840 consensus_9023#1 ------------------------------------------------------------ consensus_9023#0 GAG 843 consensus_9023#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||