These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1207 fasta sequence [AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTATGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATAGAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAG-AAAACAAAATAACCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATCAATAAAGAGTATAAATTAATTTTTCACACCTTCATTATTTGATATAATGACAAAAACAATGAA-TTGATA-ANNNAACAAGGCGAAAAGAAGAATAAATATTCTGAATGAACATTAAGGTTATGATAAATAATCAATTTAATCCAATAAATCCTCTTCTACTTTATTCATGTGAAGTTTCGTTGCTTTGTTTTAATTTTATTTTAAAAATAAACATAATTGCAATTATCATAGTTGTTACAAGTAGAACTTGATAGTAGTAGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTGAATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGATAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGCCACCAACAAATCCAGAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGGAGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAGGCAATCTATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAATTATCATTTCGTACGGCGAGAATGGCAACTGATGAAGTGTGATTAAGATAGGGATCATATACGGTTGGTATAGTTGGTGATATTTGTTTTGAGTCGACCTACCTGCTACGATGTATAAATTGATTACAGTGTCCTTCGCTATTGTACTCCTGTGAAATAACAGATTGTAGAACATGTTTACCATATGAATGCAACTTCGGGATCCATGCGTAACTCTGAACTTGTTCTGTCTCGTTTAAGTGCTGGATATAATAATGTAC] [+] EMBL CD139923 [AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTATGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATAGAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAG AAAACAAAATAACCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATCAATAAAGAGTATAAATTAATTTTTCACACCTTCATTATTTGATATAATGACAAAAACAATGAATTTGATACANNNAACAAG ] [+] EMBL CD139975 [AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTATGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATAGAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAG AAAACAAAATAACCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAA ] [-] EMBL CD200837 [ AAAAGTAAAACAAAATACCCGGTTTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATCAATAAAGAGTATAAATTAATTTTTCACACCTTCATTGTTTGATATAATGACAAAAACAATGAA TTGATA ACAAAACAAAGCGAAAAGAAGAATAAATATTCTGAATGAACATTAAGGTTATGATAAATAATCAATTTAATCCAATAAATCCTCTTCTACTTTATTCATGTGAAGTTTCGTTGCTTTGTTTTAATTTTATTTTAAAAATAAACATAATTGCAATTATCATAGTTGTTACAAGTAGAACTTGATAGTAGTAGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTT ] [-] EMBL AW017024 [ TATCATAGTTGTTACAAGTAGAACTTGATAGTAGTAGTAGTAGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTGAATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGATAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGCCACCAACAAATCCAGAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAG ] [+] EMBL CD114107 [ AGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACACCTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTGAATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGATAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGCCACCAACAAATCCAGGGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGGAGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAGGCAATCTATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAATTATCATTTCGTACGGCGAGAATGGCAACTGATGAAGTGTGATTAAGATAGGGATCATATACGGTTGGTATAGTTGGTGATATTTGTTTTGAGTCGACCTACCTGCTACGATGTATAAATTGATTACAGTGTCCTTCGCTATTGTACTCCTGTGAAATAACAGATTG ] [+] EMBL CD062719 [ GCTAATCATGTTACTGCCACCACCACCAACAAATCCTTAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTACCAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGGAGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAGGCAATCTATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAATTATCATTTCGTACGGGGAGAATGGCAACTGATGAAGTTTGATTAGGATAGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGAATGCAACTTCGGGATCCATGCGTAACTCTGAACTTGTTCTGTCTCGTTTAAGTGCTGGATATAATAATGTAC] consensusID : consensus_9028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [ATATGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATTTGACACTGAAGACTTATCCATATCTGATGAAACAGTCTGTGGAGTAGAACGCAGTCTTAAAACAGTGGGACGTCTGAGAGGTGTCGACTTTGAACAGGATTTGCTTCCAGTCTTTTCATTAGAACCGATAGATTTACCATATTTGGTTTTATTATGATCCCACAATCGCCTAGCCAGACGAGCGAGTTCCAATCCATCAACTTCTTCTA] [+] EMBL CD197685 [ATATGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATTTGACACTGAAGACTTATCCATATCTGATGAAACAGTCTGTGGAGTAGAACGCAGTCTTAAAACAGTGGGACGTCTGAGAGGTGTCGACTTTGAACAGGATTTGCTTCCAGTCTTTTCATTAGAACCGATAGATTTACCATATTTGGTTTTATTATGATCCCACAATCGCCTAGCCAGACGAGCGAGTTCCAATCCATCAACTTCTTCTA] consensusID : consensus_9028#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [CTGATGAAGTTTGATTAGGATAGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATCTAACGTTTTTCCAAAGCATTGTTATTTTTAAAAGCAAAGAGGAATGATTGGGATATAAAACATAATAAACAAAAAATATGGGATTATTATTAGTACCAAGCAACTGAAAACTAATTACAAAACAGAAACTATGTGGTAAGTAAACAAAAAT] [-] EMBL CD185762 [CTGATGAAGTTTGATTAGGATAGGGATCATATACGGTTGGTATTGTTGGTGATTTTTGTTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTTCGCTATCGAACTCATGTGAAATAACAGATTGTAGAACATGTTTACCATATGATCTTCTCACTTCAGTATTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAGGCTGAATCCATATCGGGTGACTCAAATTGAATATCTAACGTTTTTCCAAAGCATTGTTATTTTTAAAAGCAAAGAGGAATGATTGGGATATAAAACATAATAAACAAAAAATATGGGATTATTATTAGTACCAAGCAACTGAAAACTAATTACAAAACAGAAACTATGTGGTAAGTAAACAAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 AAACACAAGCAAGTCAATCAAATGCAAGTAGTTTTGATTAAGGTAAGTAAATAGGATTTA 60 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 TGTAGGAGATAAAAAAGATGCGACAATAACAAAAAGAATTGGAAAGAGAGAGAAGCGATA 120 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 GAACAACTGATTATATTTATTGGCTAGGGTGGCAAATTAAAAGAAAACAAAATAACCGGT 180 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 TTGATAAAACATTTTTTGAAAATTAAAGGAAGAATTTAAAAAGCGAAAAATTTATCAATC 240 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 AATAAAGAGTATAAATTAATTTTTCACACCTTCATTATTTGATATAATGACAAAAACAAT 300 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 GAATTGATAANNNAACAAGGCGAAAAGAAGAATAAATATTCTGAATGAACATTAAGGTTA 360 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 TGATAAATAATCAATTTAATCCAATAAATCCTCTTCTACTTTATTCATGTGAAGTTTCGT 420 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 TGCTTTGTTTTAATTTTATTTTAAAAATAAACATAATTGCAATTATCATAGTTGTTACAA 480 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 GTAGAACTTGATAGTAGTAGTAGTTGTTGTAGTATTATACAGTAGTTGGACAGTGAACAC 540 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 CTTTTGCTTTATAACATGTTTGTGGAATGAATAACTCATGTTCCCAAAGAAAATCACTTG 600 consensus_9028#1 ------------------------------------------------------------ consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 AATGATCAGTAGATAGGTCAGTGATCAAATTGTCTACTGGTTTCCCTTCATTCATACCGA 660 consensus_9028#1 -------------------------ATATGGGATCATA-TACGGTTGGTATTGTTGGTGA 34 consensus_9028#2 ------CTGATGAAGTTTGATTAGGATA-GGGATCATA-TACGGTTGGTATTGTTGGTGA 52 consensus_9028#0 TAACATTTTCATCAACATCATCGAAATCTGAGAAGCTGCTAATCATGTTACTGCCACCGC 720 ** * ** * ** ** ** ** * consensus_9028#1 TTTTTG----TTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTT 90 consensus_9028#2 TTTTTG----TTTTGAGTCGAAAAACCGGTTACGAGGTATAAATTGATTACAGTGTCCTT 108 consensus_9028#0 CACCAACAAATCCAGAGTCAAATAAATTGTCTGGAAATGCAAGTCTAGGAGTGACTTTAC 780 * ***** ** ** ** ** * ** * * * * * consensus_9028#1 CGCTATCGAACTC-ATGTGAA-ATAACAGATTGTAGAACATGTTTACCATATGATCTT-- 146 consensus_9028#2 CGCTATCGAACTC-ATGTGAA-ATAACAGATTGTAGAACATGTTTACCATATGATCTT-- 164 consensus_9028#0 CAGCATTGTATTCTGTATCAACATTACTACTATTAGATGTAGGTGATAAGATTAAGTTGG 840 * ** * * ** * * ** ** ** * **** * * * * ** * ** consensus_9028#1 --CTCACTTCAGTA-TTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAG 203 consensus_9028#2 --CTCACTTCAGTA-TTGGAAATATTTAAGTCCACTTCATGGTCCCATGCTAAATCAAAG 221 consensus_9028#0 AGCATGGTATAGCAGTTTGCGATGGTATAGGTTTTTTTATACCACTACATGCATTCCCAG 900 * * ** * ** * ** * ** ** ** * * * ** ** consensus_9028#1 GCTGAATCCATATCGGGTGACTCAAATTGAATATTTGACACTG----AAGACTTATCCAT 259 consensus_9028#2 GCTGAATCCATATCGGGTGACTCAAATTGAATATCTAACGTTTTTCCAAAGCATTGTTAT 281 consensus_9028#0 GC--AATC--TATCACTTGAAACCCATCGGTTGTCTGTAATGGGATGAAAA--TTATCAT 954 ** **** **** *** * ** * * * * ** * ** consensus_9028#1 ATCTGATGAAACAGTCTGTGGAGTAGAACGCAGTCTTAAAACAGTGGG-ACGTCTGAGAG 318 consensus_9028#2 TTTTAAAAGCAAAGAGGAATGATTGGGATATAAAACATAATAAACAAA-AAATATGGGAT 340 consensus_9028#0 TTCGTACGGCGAGAATGGCAACTGATGAAGTGTGATTAAGATAGGGATCATATACGGTTG 1014 * * * * * * * * consensus_9028#1 GTGTCGACTTTGAACAGGATTTGCTTCCAGTCTTTTCATTAGAACCGATAGATTTACCAT 378 consensus_9028#2 -TATTATTAGTACCAAGCAACTGAAAACTAATTACAAAACAGAAACTATGTGGTAAGTAA 399 consensus_9028#0 GTATAGTTGGTGATATTTGTTTTGAGTCGACCTACCTGCTACGATGTATAAATTGATTAC 1074 * * * * * * * * ** * * * consensus_9028#1 ATTTGGTTTTATTATGATCCCACAATCGCCTAGCCAGACGAGCGAGTTCCAATCCAT-CA 437 consensus_9028#2 ACAAAAAT---------------------------------------------------- 407 consensus_9028#0 AGTGTCCTTCGCTATTGTACTCCTGTGAAATAACAGATTGTAGAACATGTTTACCATATG 1134 * * consensus_9028#1 ACTTCTTCTA-------------------------------------------------- 447 consensus_9028#2 ------------------------------------------------------------ consensus_9028#0 AATGCAACTTCGGGATCCATGCGTAACTCTGAACTTGTTCTGTCTCGTTTAAGTGCTGGA 1194 consensus_9028#1 ------------- consensus_9028#2 ------------- consensus_9028#0 TATAATAATGTAC 1207 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||