These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [TAAATTAGAAAGTCGAGGTGAAGAATTACGTGAATTACAAAAAGCATTAAAAGCACGTGCTGATGAACTTAGTGAAATGTCTGTACGTGTTAGTTTAGCTGAGAAAAAGTTAGAAACCGCAGGAAAATCGAATGAAGAGAAAATTTCCCGATTAGAACTACGTTTAGAACAATCAGAATCTCAACAGAAACGTAATGAAAAAGAATATGAACAAACATTAGATGCACTTCATGCGGATATTGAGGCTTTGGAACAAGAAAAAGCACATCTTAAAGAAAAATTGAAAACACTTAGCAAAAAAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTGCAAGCACAACGCAATCTAAAGCGCAGCCTTGAACAACAGGCTCTACCACTACTACTACTTCAGCTACTACACCTGGTAGACAAACTTCAGTCGAATGTGCATCACCTTCACCTGGTCCAGCTCGTTTGGCTGCTTACCGAGATGCTTGATTAATGGCAATGGAGATTGAAGCTCTCCGTGAAGCTATTCGACGTTTATCTTCTGAAGTATCCAGACTTCGTGGTGAGAAAATGCTTGAACAACTTAAGAACTTGGGTAC] [+] EMBL AI975394 [TAAATTAGAAAGTCGAGGTGAAGAATTACGTGAATTACAAAAAGCATTAAAAGCACGTGCTGATGAACTTAGTGAAATGTCTGTACGTGTTAGTTTAGCTGAGAAAAAGTTAGAAACCGCAGGAAAATCGAATGAAGAGAAAATTTCCCGATTAGAACTACGTTTAGAACAATCAGAATCTCAACAGAAACGTAATGAAAAAGAATATGAACAAACATTAGATGCACTTCATGCGGATATTGAGGCTTTGGAACAAGAAAAAGCACATCTTAAAGAAAAATTGAAAACACTTAGCAAAAAAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTGCAAGCACAACGCAATCTAAAGCGCAGCCTTGAACAACAGGCTCTACCACTACTACTACTTCAGCTACTACACCTGGTAGACAAACTTCAGTCGAAT ] [+] EMBL CD178584 [ AAACGTAATGAAATAGAGTATGATCAATCATTAAATGCACTTCAAGCGGATATTGAGGCTTTGGAACAAGAAAAAGCAGATCTTAAAGAAAAATTGAAAACACTTAGTAAAAAAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTCCAAGCGCAACGCAATCTAAAGCGCAGCCTTCAACAACAAGCTCTACCACTACTACTACTTCAGCTCCTGCACCTGGTAGACAAACTTCAGTCGAATGTGCATCACCTTCACCTGGTCCAGCTCGTTTGGCTGCTTACCGAGATGCTTGATTAATGGCAATGGAGATTGAAGCTCTCCGTGAAGCTATTCGACGTTTATCTTCTGAAGTATCCAGACTTCGTGGTGAGAAAATGCTTGAACAACTTAAGAACTTGGGTAC] consensusID : consensus_9032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GCTCTGATGACACAACACCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGAGGGGCAACTACACCCTGTTTGTCCGTCACGTTCACCATNACTCCTCTTCTCCNAGGTGTACGTCCNGATTCGCGCCAGGTGGTCCGAGAGTGGANTTCTGTGCGTTGGTANNCGGGTGAATNNTCATTGTCGTCGTCGGACTGGGACTTGGTGCAAGGTGGTGGTCGACACTGAAGAGCGATACAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGA] [+] EMBL CD134442 [GCTCTGATGACACAACACCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGAGGGGCAACTACACCCTGTTTGTCCGTCACGTTCACCATNACTCCTCTTCTCCNAGGTGTACGTCCNGATTCGCGCCAGGTGGTCCGAGAGTGGANTTCTGTGCGTTGGTANNCGGGTGAATNNTCATTGTCGTCGTCGGACTGGGACTTGGTGCAAGGTGGTGGTCGACACTGAAGAGCGATACAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGA] consensusID : consensus_9032#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CGTTCTCTATTTGTTTAATAGTGTTGCTGATTTTTTTCTGTTGTTGGTTAGATAATGTTTAACGGGAAGTCTGTGTATGCTGCTGCAATGCCCAGTAGCTTTAGTGACTCTGTTCTACTCAGGAGTTCTTCAAAGTGTCCTACCTATCTTGTTCCACTGCTCTTCAGCCTCAGTGATTGGTGCTCCTTTGTTTTTTTGACTGGTTGCTCTGATCTACTATATTTTTTGCAAACATCCTGGTTGTATCACATAGTTCTTTCATATCTCCTTATCTTGCAGCCTGTCCTACTTTGATTGCCAGGTTTTCTACATATTTCCACTTGTCTATTGCCATGCTCTTTTTTACTCGTTTGTTTGCTTCCATATATT] [+] EMBL CD061105 [CGTTCTCTATTTGTTTAATAGTGTTGCTGATTTTTTTCTGTTGTTGGTTAGATAATGTTTAACGGGAAGTCTGTGTATGCTGCTGCAATGCCCAGTAGCTTTAGTGACTCTGTTCTACTCAGGAGTTCTTCAAAGTGTCCTACCTATCTTGTTCCACTGCTCTTCAGCCTCAGTGATTGGTGCTCCTTTGTTTTTTTGACTGGTTGCTCTGATCTACTATATTTTTTGCAAACATCCTGGTTGTATCACATAGTTCTTTCATATCTCCTTATCTTGCAGCCTGTCCTACTTTGATTGCCAGGTTTTCTACATATTTCCACTTGTCTATTGCCATGCTCTTTTTTACTCGTTTGTTTGCTTCCATATATT] consensusID : consensus_9032#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [CGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCACCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGTGATGAATCTGAGGGTGTNGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGGTGTGATATGGG] [+] EMBL CD180106 [CGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCACCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGTGATGAATCTGAGGGTGTNGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGGTGTGATATGGG] consensusID : consensus_9032#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [GAAGATCAAAGAACACACTACGCCGAGAAATAGAGACAGACATGAGAAGAACGAATAAAAACTGGATGGAGCTAGAAAAGAACGCCCATGACAGAGTGGGTTGGAGAATGCTGGTCGGCAGCTTATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAACTTAAATATTCTAAAGTGCTAGTTCTTTTTTTTTATTTTTTTGTTTTTTTTTGTCTTTGTTACTAAGACGGGTACAATCACGTGTTATCGGTTTTACAAAATGTAATTTTTTTACTTCTTCAATGTATACAACAATAATACTACTAATAATAGTAATAGTAATAATGATTGAATAATAAAAA] [+] EMBL CD145843 [GAAGATCAAAGAACACACTACGCCGAGAAATAGAGACAGACATGAGAAGAACGAATAAAAACTGGATGGAGCTAGAAAAGAACGCCCATGACAGAGTGGGTTGGAGAATGCTGGTCGGCAGCTTATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAACTTAAATATTCTAAAGTGCTAGTTCTTTTTTTTTATTTTTTTGTTTTTTTTTGTCTTTGTTACTAAGACGGGTACAATCACGTGTTATCGGTTTTACAAAATGTAATTTTTTTACTTCTTCAATGTATACAACAATAATACTACTAATAATAGTAATAGTAATAATGATTGAATAATAAAAA] consensusID : consensus_9032#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CAGCTGAGAGGCGGTAAAAATACACACTTCGTCACACAGTGGGTCAATTATGCAGATAACAACATCCTGCCGTCTGTCGCTACCTGGGTATCACAGATCTTGGAGGGCCCAGATTGCAGCCCAATTTAGTGGTTGCGCATTAAAAATTGTCAATTTCATTCCTGGTGTGACTGATAAGGATAAAAAGTTCTTGGAAAAGTTCCCTCCTGCAACTGTCCCGGTTTTCGAAGCTGATGATGGTACATGCCTTTTCGATGTGAATGCCATAGCCTGTTGTTT] [+] EMBL CD122930 [CAGCTGAGAGGCGGTAAAAATACACACTTCGTCACACAGTGGGTCAATTATGCAGATAACAACATCCTGCCGTCTGTCGCTACCTGGGTATCACAGATCTTGGAGGGCCCAGATTGCAGCCCAATTTAGTGGTTGCGCATTAAAAATTGTCAATTTCATTCCTGGTGTGACTGATAAGGATAAAAAGTTCTTGGAAAAGTTCCCTCCTGCAACTGTCCCGGTTTTCGAAGCTGATGATGGTACATGCCTTTTCGATGTGAATGCCATAGCCTGTTGTTT] consensusID : consensus_9032#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [CGGGNATTCGATTGAATGGACTGTGTCCTGGGTACAATCGTATGTTTGGCTGGTTAGTAGCTCGTGTCAATAAAACTTTGGATACAAAAGTTAAACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTTTTTTTGGTTCTGANC] [+] EMBL CD133113 [CGGGNATTCGATTGAATGGACTGTGTCCTGGGTACAATCGTATGTTTGGCTGGTTAGTAGCTCGTGTCAATAAAACTTTGGATACAAAAGTTAAACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTTTTTTTGGTTCTGANC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9032#1 ------------------------------------------------------------ consensus_9032#3 ------------------------------------------------------------ consensus_9032#6 ------------------------------------------------------------ consensus_9032#2 ------------------------------------------------------------ consensus_9032#5 ------------------------------------------------------------ consensus_9032#0 TAAATTAGAAAGTCGAGGTGAAGAATTACGTGAATTACAAAAAGCATTAAAAGCACGTGC 60 consensus_9032#4 ------------------------------------------------------------ consensus_9032#1 ------------------------------GCTCTGATGACACAACACCTCAGATTCATC 30 consensus_9032#3 -------------------------------------------------CGACATGAAGA 11 consensus_9032#6 ------------------------------------------------------------ consensus_9032#2 ---------------------------------------------------CGTTCTCTA 9 consensus_9032#5 ------------------------------------------------------------ consensus_9032#0 TGATGAACTTAGTGAAATGTCTGTACGTGTTAGTTTAGCTGAGAAAAAGTTAGAAACCGC 120 consensus_9032#4 ------------------------------------------------------------ consensus_9032#1 ACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAA-CTCCTCTTCTCCAGGTGTCGTC 89 consensus_9032#3 GCGATCAACTGGAGTCGGCGACTCGTC-CACCCGA---CTTGATGATGACAGATGTGA-- 65 consensus_9032#6 ------------------------------------------------------------ consensus_9032#2 TTTGTTTAATAGTGTTGCTGATTTTTTTCTGTTGTTGGTTAGATAATGTTTAACGGGAAG 69 consensus_9032#5 ------------------------------------------------------------ consensus_9032#0 AGGAAAATCGAATGAAGAGAAAATTTCCCGATTAGAACTACGTTTAGAACAATCAGAATC 180 consensus_9032#4 --------------------GAAGATCAAAGAACACACTACGCCGAGAAATAGAGACAGA 40 consensus_9032#1 GATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGAGGGGCA 149 consensus_9032#3 GAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCG 125 consensus_9032#6 ------------------------------------------------------------ consensus_9032#2 TCTGTGTATGCTGCTGCAATGCCCAGTAGCTTTAGTGACTCTGTTCTACTCAGGAGTTCT 129 consensus_9032#5 ------------------CAGCTGAGAGGCGGTAAAAATACACACTTCGTCACACAGTGG 42 consensus_9032#0 TCAACA-GAAACGTAATGAAAAAGAATATGAACAAACATTAGATGCACTTCATGCGGATA 239 consensus_9032#4 CATGAGAAGAACGAATAAAAACTGGATGGAGCTAGAAAAGAACGCCCATGACAGAGTGGG 100 consensus_9032#1 ACTAC-ACCCTGTTTGTCCGTCACGTTCACCATNACTCCTCTTCTCCNAGGTGTACGTCC 208 consensus_9032#3 GTGATGAATCTGAGGGT--GTTGTGTCATCAGAGACAATTTCTGATTACGGTGTA--TCT 181 consensus_9032#6 ----------------------------------------------------------CG 2 consensus_9032#2 TCAAAGTGTCCTACCTATCTTGTTCCACTGCTCTTCAGCCTCAGTGATTGGTGCTCCTTT 189 consensus_9032#5 GTCAATTATGCAGATAACAACATCCTGCCGTCTGTCGCTACCTGGGTATCACAGATCTTG 102 consensus_9032#0 TTGAGGCTTTGGAACAAGAAAAAGCACATCTTAAAGAAAAATTGAAAACACTTAGCAAAA 299 consensus_9032#4 TTGGAGAATGCTGGTCGGCAGCTTATGCTCCATTGGGA-----GTAACAGGCGTAAGTAA 155 consensus_9032#1 NGATTCGCGCCAGGTGGTCCGAGAGTGGANTTCTGTGCGTTGGTANNCGG--GTG--AAT 264 consensus_9032#3 GGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATG-CAAACGA--GTG--AGG 236 consensus_9032#6 GGNATTCGATTGAATGGACTGTGTCCTGGGTACAATCGTATGTTTGGCTG--GTT--AGT 58 consensus_9032#2 GTTTTTTTGACTGGTTGCTCTGATCTACTATATTTTTTGCAAACATCCTG--GTTGTATC 247 consensus_9032#5 GAGGGCCCAGATTGCAGCCCAATTTAGTGGTTGCGCATTAAAAATTGTCA--ATT-TCAT 159 consensus_9032#0 AAGCTTTATTTGAAGGAATTATTAAATCACCACTGCTTGCAAGCACAACGCAATCTAAAG 359 consensus_9032#4 GTAAGTAAACTTAAATATTCTAAAGTGCTAGTTCTTTTTTTTTATTTTTTTGTTTTTTTT 215 * consensus_9032#1 NNTCATTGTCGTCGTCGGACTGGGAC-TTGGTGCAAGGTGGTGGTCGACACTGAAGA--G 321 consensus_9032#3 GTGTTTTGTCGTCGAGCAGAGATGGT-GTTGTGATGGGTGTGTGATGAATCTGAGGGT-G 294 consensus_9032#6 AGCTCGTGTCAATAAAACTTTGGATA-CAAAAGTTAAACGTCAATTTTTCATTGGTGT-A 116 consensus_9032#2 ACATAGTTCTTTCATATCTCCTTATC-TTGCAGCCTGTCCTACTTTGATTGCCAGGTTTT 306 consensus_9032#5 TCCTGGTGTGACTGATAAGGATAAA---AAGTTCTTGGAAAAGTTCCCTCCTGCAACTGT 216 consensus_9032#0 CGCAGCCTTGAACAACAGGCTCTACCACTACTACTACTTCAGCTACTACACCTGGTAGAC 419 consensus_9032#4 TGTCTTTGTTACTAAGACGGGTACAATCACGTGTTATCGGTTTTACAAAATGTAATTTTT 275 consensus_9032#1 CGATACAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGA---TGACAGATGTGAGA- 377 consensus_9032#3 TNGTGTCATCAGAG---ACAATTTCTGATTACGGTGTATCTG---GGTGTGATATGGG-- 346 consensus_9032#6 TTGGAT-ATTGCAGGTTTTGAGATTTTCACTTTTTTTGGTTC---TGANC---------- 162 consensus_9032#2 CTACATATTTCCACTTGTCTATTGCCATGCTCTTTTTTACTCGTTTGTTTGCTTCCATAT 366 consensus_9032#5 CCCGGTTTTCGAAGCTGATGATGGTACATGCCTTTTCGATGTGAATGCCATAGCCTGTTG 276 consensus_9032#0 AAACTTCAGTCGAATGTGCATCACCTTCACCTGGTCCAGCTCGTTTGGCTGCTTACCGAG 479 consensus_9032#4 TTACTTCTTCAATGTATACAACAATAATACTACTAATAATAGTAATAGTAATAATGATTG 335 consensus_9032#1 ------------------------------------------------------------ consensus_9032#3 ------------------------------------------------------------ consensus_9032#6 ------------------------------------------------------------ consensus_9032#2 ATT--------------------------------------------------------- 369 consensus_9032#5 TTT--------------------------------------------------------- 279 consensus_9032#0 ATGCTTGATTAATGGCAATGGAGATTGAAGCTCTCCGTGAAGCTATTCGACGTTTATCTT 539 consensus_9032#4 AATAATAAAAA------------------------------------------------- 346 consensus_9032#1 ---------------------------------------------------------- consensus_9032#3 ---------------------------------------------------------- consensus_9032#6 ---------------------------------------------------------- consensus_9032#2 ---------------------------------------------------------- consensus_9032#5 ---------------------------------------------------------- consensus_9032#0 CTGAAGTATCCAGACTTCGTGGTGAGAAAATGCTTGAACAACTTAAGAACTTGGGTAC 597 consensus_9032#4 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||