These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 896 fasta sequence [TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGGAGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTATGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCACTAGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTCTTAAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCTTTAAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTTTATTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA] [+] EMBL CD170249 [TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGGAGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTATGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACC ] [+] EMBL CD116314 [ AGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTGATGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGANAGGTTAGCTATTGNCATCGACTCTGTCAAGCAACGCACAGAAACAC ] [+] EMBL CD064790 [ AAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAA ] [+] EMBL CD064849 [ TCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATGTGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCT ] [+] EMBL CD135399 [ ccttaCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTCCCCCCCGGGCATAATTTGTCCCCATCTG ] [-] EMBL CD190581 [ CGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGGTTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCACTAGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTCTTAAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCTTTAAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTTTATTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA] consensusID : consensus_9042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TCCCGGTATTCGAGTGGTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATTTT] [+] EMBL CD064594 [TCCCGGTATTCGAGTGGTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAAACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGTTGCCTAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTTTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTTGCTAGTGGTTTGCAATTTT] consensusID : consensus_9042#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [CCTAACCAATACCTATCATCTAAAGGTGTGAAATTGATTTCTGAAACATCTGTATCAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGTACGTCATAATTTATATAATTGTTGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCATAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTT] [-] EMBL CD184377 [CCTAACCAATACCTATCATCTAAAGGTGTGAAATTGATTTCTGAAACATCTGTATCAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAACTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGTACGTCATAATTTATATAATTGTTGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAAGAGATCAGGTTTACTTCCAGATGGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACCCGGGCATAATTTGTCCCCATCTGGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCATAAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9042#0 TCGAGCTGTCTATGGACGAAATTTTAGTGTCCCCGACGAAGAGTCCAGTGCAACTGTAGG 60 consensus_9042#1 ------------------------------------------------------------ consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 AGTGACTTTTGCCTTAAGTTCTGTGAATCAGGATAACATTGGATACTACTACGTCAGTTA 120 consensus_9042#1 ------------------------------------------------TCCCGGTATTCG 12 consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 TGTTGCCTGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAA 180 consensus_9042#1 AGTGG--TGTGACCTCAAAAATCCAGAATGGGATCCCATTGAAATACGTAATCTCCCTAA 70 consensus_9042#2 ------------CCTAACCAATACCTA------TCATCTAAAGGTGTGAAATTGATTTCT 42 *** * *** * * ** * * * * *** * consensus_9042#0 ACAATACCTATCATCTAAAGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAA 240 consensus_9042#1 ACAATACCTATCATCTAAAGCTGTCTTGTTCACTTTTTTTCTATCGCATAGAGAAAGCAA 130 consensus_9042#2 GAAACATCTGT-ATC---AGCTGTCTTGTTTACTTTTTTTCTATCGCATAGAGAAAGCAA 98 ** * ** * *** ************ ***************************** consensus_9042#0 CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAA-- 298 consensus_9042#1 CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAA-- 188 consensus_9042#2 CTCAATTCTGTTTGAGATTGTAGTACATTTTTCCGGCCTCGTTCTTACAAACTCAGAAGT 158 ********************************************************** consensus_9042#0 -----------------------------ATGCGCGAAAATATGTGTATCTCTGACTCAA 329 consensus_9042#1 -----------------------------ATGCGCGAAAATATGTGTATCTCTGACTCAA 219 consensus_9042#2 ACGTCATAATTTATATAATTGTTGTTTAGATGCGCGAAAATATGTGTATCTCTGACTCAA 218 ******************************* consensus_9042#0 GAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACC 389 consensus_9042#1 GAGATCAGGTTTACTTCCAGATGGGCGGGCGTATTTATGCTTCTCGTGAACACTTTGACC 279 consensus_9042#2 GAGATCAGGTTTACTTCCAGATGGGCGGGCGTATATATGCTTCTCGTGAACACTTTGACC 278 ********************************** ************************* consensus_9042#0 CGGGCATAATTTGTCCCCATCTG-------------------------------TTGCCT 418 consensus_9042#1 CGGGCATAATTTGTCCCCATCTG-------------------------------TTGCCT 308 consensus_9042#2 CGGGCATAATTTGTCCCCATCTGGTAGCATTCTTATTAAATAATTGATTTCTAGTTGCAT 338 *********************** **** * consensus_9042#0 AAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTT 478 consensus_9042#1 AAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTT 368 consensus_9042#2 AAAGGTAGATCCCTCCTTGCCTCCAAGTTATCTTACAACTTTACCACGCTTCAAAAGTTT 398 ************************************************************ consensus_9042#0 TTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTT 538 consensus_9042#1 TTAGCTAACAAAGAAGCCTCTAAGGTTCAGTTAGAACGTATCAGCTACATGCAAAATCTT 428 consensus_9042#2 T----------------------------------------------------------- 399 * consensus_9042#0 GCTAGTGGTTTGCAATCTTCACTTCATAGCTTATTTAGTCAAGGTATAGCTACTGAAAGG 598 consensus_9042#1 GCTAGTGGTTTGCAATTTT----------------------------------------- 447 consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 TTAGCTATTGCAATCGACTCTGTCAAGCAACGCACAGAAACACTCAAGTACTCAATATCA 658 consensus_9042#1 ------------------------------------------------------------ consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 CTAGCACGCAATAAACTACACGTACTGGAAAGCAGAAAATTTACTCTAGAACAGGAATTC 718 consensus_9042#1 ------------------------------------------------------------ consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 TTAAAGATAGATGCAAATAAAGCAGCAATCAATAGCCGGTTGCAAGTTCTAAAACAATCT 778 consensus_9042#1 ------------------------------------------------------------ consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 TTAAAGGATGGCTATAATGACCTCAGTAAAACACGTTACGCACTGATGACTCGTATTCTT 838 consensus_9042#1 ------------------------------------------------------------ consensus_9042#2 ------------------------------------------------------------ consensus_9042#0 TATTTGTTAAATGAAGTTTATGGTCTTTTTATCGATGATTTAATAAATCCAGTGTACA 896 consensus_9042#1 ---------------------------------------------------------- consensus_9042#2 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||