These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 698 fasta sequence [ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAATTGCTTTCTTCCTGTTCTTCTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC] [+] EMBL CD085968 [ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATANTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGT ] [+] EMBL CD086011 [ GCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTTTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGCCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTG ] [+] EMBL CD085891 [ GCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCAATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTCGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTCCGTGCCTTGGCTTTCTCTGTTCTGGTTCGGCTGTTG ] [+] EMBL CD086229 [ CTCCCTGATCGGCGGTCTCATCAAGTCACACATTAACTGGACGTCCTTTTACACACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCTGTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGCCAAGTCCCGCCGTTTTGTCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTTC ] [-] EMBL CD090189 [ ACATCCATAGGAAGGTCTGTGTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACTGGTCTATTCAACAGTTCCTCGAAGTATTCTGCCCATCTTTTCCTCCGTTCTTGAATCCCAATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGGTTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATATTTCTGCTTGTCGACTCTTATGCTCTTCTTCACTTGCTTGTTTGTCTCTGTGTATTTAGTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAATTGCTTTCTTCCTGTTCTTCTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC] consensusID : consensus_9043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [ACACATTACGCCGAGATATAGAGACAGACATGAGAAGAATGAACAAAAATTGGATAGAACTAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATGCTGGTCGTCAGCCTATGTTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTATAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACACTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTCCTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAAGTTAGTCCCAATCTATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTTGTATAATTCTTATTTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACTACATATATCTCAAATATGAGTCTTGTAGTGAAGGCTGATATATG] [+] EMBL CD168088 [ACACATTACGCCGAGATATAGAGACAGACATGAGAAGAATGAACAAAAATTGGATAGAACTAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATGCTGGTCGTCAGCCTATGTTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTATAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACACTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTCCTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAAGTTAGTCCCAATCTATTAGCTA ] [-] EMBL CD068509 [ TGGTCGTCAGCCTATGTTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTATTTTAATTCTTTGTTGATTAGCTTAGTGTATAATGAGTTGATGCTTAACGTGAACCATACAGTATTCAAGTCTCCTGGTATACAGCAACACTTCAATACAGATACATCTAAATGATGAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGTTAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTTTAGTAACTAAACCATATGCAATTTATGCATATTCCTGTTATCATAAGCTTTCATTTGATCTATTGACTCCTATTATACGATTTAGTAGTCTTAAGTTAGTCCCAATCTATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTTGTATAATTCTTATTTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACTACATATATCTCAAATATGAGTCTTGTAGTGAAGGCTGATATATG] consensusID : consensus_9043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [ACGTGATAAGACCACCAATCAGAGAGCTGCGAATTATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCGGCTTCTGCCTAGCCCAGCCAGTTAAGTTCAGAACACCAATAACAGCCTCTGCAATCTGAATCATTATTCACAAACATACTGGGTTTGTATACCAATCAAACAGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGGTTTGGCCAAATGTGACTGTGAATAGTGGGGACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTAAATTGTATGATAATAGTTCATAGGTCAAAATAAAGCTTATGATAAGAGGAATACGAATATGAATAGTTTAGTT] [+] EMBL CD092647 [ACGTGATAAGACCACCAATCAGAGAGCTGCGAATTATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCGGCTTCTGCCTAGCCCAGCCAGTTAAGTTCAGAACACCAATAACAGCCTCTGCAATCTGAATCATTATTCACAAACATACTGGGTTTGTATACCAATCAAACAGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGGTTTGGCCAAATGTGACTGTGAATAGTGGGGACAGTAATCAATAGACTGGGGATAACTCAAGAATGGTAAATTGTATGATAATAGTTCATAGGTCAAAATAAAGCTTATGATAAGAGGAATACGAATATGAATAGTTTAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9043#1 ----------------ACACATTACGCCGAG-ATATAGAGACAGACATGAGAAGAATGAA 43 consensus_9043#2 ------------------------------------------------------------ consensus_9043#0 ACAGGAGGACCGGTTAGCGCTCTAGACTGCTCGTACGGTTTCGTGTGTCACTGTTCCAAT 60 consensus_9043#1 CAAAAATTGGATAGAACTAGAAAGGAAGGCCCGGGACAGAGTGGGTTGGAGAATG--CTG 101 consensus_9043#2 -----------------------------------ACGTGATAAGACCACCAAT----CA 21 consensus_9043#0 CGATAATTCGCTGCTCCCTGATTGGCGGTCTCATCAAGTCACACATTAACTAGACATCCA 120 * * consensus_9043#1 GTCGTCAGCCT-ATGTTCCATTGGGA--GTAACAGGCGTAAGTAA-GTAAGTATTTTAAT 157 consensus_9043#2 GAGAGCTGCGA-ATTATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGA 80 consensus_9043#0 ATCGGCCACAAGATTTAACACTTCCAAATCTTCTTGAATAGGAGGTATAGTATGTTTGCT 180 * * ** * * * * * * * consensus_9043#1 TC---TTTGTTGATTAGCTT-AGTGTAT-AATGAGTTGATGCTTAACGTGAACCATACAG 212 consensus_9043#2 GCG--CTTATCGATCCGGCT-TCTGCCT-AGCCCAGCCA-GTTAAGTTCAGAACAC-CAA 134 consensus_9043#0 GTTACTTCAGTGTCTAACTTCAGTGCTTCAGTTGGTATATTGTCAAGTCCCGCCGTTTTG 240 * * * ** * * * * * * consensus_9043#1 TATTCAAGTCTCCTGGTATACAGC-AACACTTC--AATACAGATACATCTAAATGA---T 266 consensus_9043#2 TAAC--AGCCTCT--GCAATCTGA-ATCATT-----ATTCACAAACATACTGGGTT---T 181 consensus_9043#0 TCTGATGGTCACCCTGAATTTTTCGATCGTTGGTGAAGTGACATCCATAGGAAGGTCTGT 300 * * * * * * * * * * * * *** * consensus_9043#1 GAATTCCAAATCGGACAGAATACTTATCTTAGATTCCACTTTTAAGCACAGATTCTCTGT 326 consensus_9043#2 GTATACCAA-TCAAACAGACCAC--ATCGT--ACCATAAAATAGAAAATAACATTTGTAC 236 consensus_9043#0 GTGTGCTTCTTCGATCCCCGGTGGATTCAATGGAACCGGTCTATTCAACAGTTCCTCGAA 360 * * * ** * ** * * * * consensus_9043#1 TAGATCTGAACAAGGAATAACTGAATGGTTACTGCTAGGAATGATTTATGGATTATTGTT 386 consensus_9043#2 AAGGTTTGGCCAAATG-TGACTG--TGAATAGTGGGGACAGTAATCAATAGACTGGGG-- 291 consensus_9043#0 GTATTCTGCCCATCTTTTCCTTCGTTCTTGAATCTCAATGATTGTCTTTCCTTCTTTGTC 420 * ** ** * * * * * * * * * consensus_9043#1 T------AGTAACTAAACCATATGCAATTTATGCA------TATTCCTGTTATCATAAGC 434 consensus_9043#2 --------ATAACTCAAGAATGGTAAATT---GTA------TGATAATAGT-TCATAGG- 332 consensus_9043#0 CTTGACGGGTCTCTCCGGTTTACTATATCTCCGTGCTAGTTTCTTCGTTGTATCATATGG 480 * ** * ** * * * * * ***** * consensus_9043#1 TTTCATTTGATCTATTGACTCCTATTATACGATTTAGT-AGTCTTAAGTTAGTCCCAATC 493 consensus_9043#2 TCAAAATAAAGCTTATGATAAGAGGAATACGAATATGA-ATAGTTTAGTT---------- 381 consensus_9043#0 TTGTTTCATATTCCCTTCTCTTGCAGATGTTTTTTTGTCGTTGCTAAGTCTTCCACATAT 540 * * * ** * * * *** consensus_9043#1 TATTAGCTATAGTCTCCTATCCTGAAAGTCACCTTTGGGTTGATCTTGTATAATTCTTAT 553 consensus_9043#2 ------------------------------------------------------------ consensus_9043#0 TTCTGCTTGTCGACTCTTATGCTCTTCTTCACTT---GCTTGTTTGTCTCTGTGTATTTA 597 consensus_9043#1 TTGTCATTTTATGATGTGATGTGGTCAAGCACATCTGTAAATAAACTACATATATCTCAA 613 consensus_9043#2 ------------------------------------------------------------ consensus_9043#0 GTTTCGTGCCTTGACTTTCTCTGTTCTGGTTCGGCTGTTGTTAA-TTGCTTTCTTCCTGT 656 consensus_9043#1 ATATGAGTCTTGTAGTGAAGGCTGATATATG----------- 644 consensus_9043#2 ------------------------------------------ consensus_9043#0 TCTTCTTTTCTTGAATATTGACCAAGGTTTCGATATAGATCC 698 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||