These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 793 fasta sequence [CATTGATTTTCGTTACATTTCGAAGTTCGGAAAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG] [+] EMBL CD080005 [CATTGATTTTCGTTACATTTCGAAGTTCGGAAAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAn ] [+] EMBL CD152744 [ AAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATG ] [+] EMBL CD197214 [ GAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGAC ] [+] EMBL CD197007 [ AGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACGAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCCAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTG ] [-] EMBL CD140683 [ tTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG] [-] EMBL CD196966 [ CATGTCAAAGATCATGCAAGAATTGAATTAAGAAATGCAAAATGTATGTGTAGATACTGGGAATATTAATCTTATTTCGCTGTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGGTGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG] [+] EMBL CD119396 [ TAGGCGCACCATTTTGTACGTGGTAATCAATGAGATGTTGTATACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATGTCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGCACGTACAAGAAAGTTCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTTACCAACATACCAAGGTTCACCGAC ] consensusID : consensus_9044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTTCGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTGAGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAAGATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAGACAAAATGTAGTTATACAAGCCCCAAAATGCCCTGGTACGGTCGACAGTGAGAAGAGTTCGCTCTCCCTCTC] [-] EMBL CD064680 [TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTTCGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAATCAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGTAAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAAATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTTAACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTGTTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTGAGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAAGATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAGACAAAATGTAGTTATACAAGCCCCAAAATGCCCTGGTACGGTCGACAGTGAGAAGAGTTCGCTCTCCCTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9044#0 ---------------------------------CATTGATTTTCGTTACATTTCGAAGTT 27 consensus_9044#1 TTGAAAACGAACATGAAATGAATTGTCACACTTCATTGATTTTCGTTACATTTCGAAGTT 60 *************************** consensus_9044#0 CGGAAAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAAT 87 consensus_9044#1 CGGANAATTTTACAAAGACGAAATATCAGGATTATTATGAAAATCATATTACGCGGAAAT 120 **** ******************************************************* consensus_9044#0 CAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGT 147 consensus_9044#1 CAGTGATTAATTTGCAGAGCAGCAACAAAAAGGTCATTAGTAAAATAATGTGATGAAAGT 180 ************************************************************ consensus_9044#0 AAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAA 207 consensus_9044#1 AAAATAAATTACAGCCAAATATCATTACATGTTGCACAAGTTTAGTATAAAAGTAGGCAA 240 ************************************************************ consensus_9044#0 ATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTT 267 consensus_9044#1 ATCGATTTACACAGTTTTGGAATGTTATGAAATAAAAAGTTGATAAAGAAAGCACAACTT 300 ************************************************************ consensus_9044#0 AACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTG 327 consensus_9044#1 AACAATATAAGCATGGGGTATAAAATAAAGTTAGTAGATCACAGAGATAAAGTTGAGTTG 360 ************************************************************ consensus_9044#0 TTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCATGCAAG--AATTGAATTA 385 consensus_9044#1 TTGGTATATCGCCACTGAATTGTGCACGCATGTCAAAGATCCTGAAATTCAAAGATGTTG 420 ***************************************** ** ** ** ** consensus_9044#0 AGAAA---TGCAAAATGTATGTGTAGAT-ACTGGGAATATTAATCTTA---TTTCGCT-- 436 consensus_9044#1 AGATTATTTACATGATATGATAACAGCTGACTGCTTAAATTAACTTAAAAGTTCAGCAAA 480 *** * ** ** * ** * **** * ***** * * ** ** consensus_9044#0 GTCTAGTGACCGAATAGGCGCACCATTTTGTACGTGGTAAT---CAATGAGATGTTGTAT 493 consensus_9044#1 GATTATTAGTTTATCCGGAAAGCTGCATTAATCATAGCACTGGACAGTAAAATCGCTTAG 540 * ** * * ** * ** * * * * * ** * * ** ** consensus_9044#0 ACTATCAAATACTCGTTCTTTTGTACGTACCTTTCCGTTAGGATCGGCCAGTAATAAATG 553 consensus_9044#1 ACAAA-ATGTAGTTATACAAGC-CCCAAAATGCCCTGGTACGGTCGAC-AGTGAGAAGAG 597 ** * * ** * * * * * * * ** * *** * *** * ** * consensus_9044#0 TCTATATTTTCCGTCTTGAAGGCCGCTTAATACAAACTGACCGGGCTGCTGAATGCTAGC 613 consensus_9044#1 TTCGCTCTCCCTCTC--------------------------------------------- 612 * * * ** consensus_9044#0 ACGTACAAGAAAGTCCCCATCATAACGCAACAAATTTTCGGCTTGTGATCTGGACATTTT 673 consensus_9044#1 ------------------------------------------------------------ consensus_9044#0 ACCAACATACCAAGGTTCACCGACTGGTTCTAAATGTTCAAAATTTGGAAGTCCAACCGG 733 consensus_9044#1 ------------------------------------------------------------ consensus_9044#0 TGCTTTTATATTAGAGATTGATTTGACACCGGCGACTTTGTTAATTTTGCGGGAAGGTTG 793 consensus_9044#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||