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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1219 fasta sequence
[AGTTATCAAGTATCACTTCTAAATTCACCGCGGTGGTAAAAAAACGTCTATCGCAAAATCTCAATCAGGGACATCATCTGTCCCTGAGATGCACCAGACACACTGTGAGACATAAAATACTTCACCTATCCTGGCATCCAAAGAAATTCCTTACGGTAGCTATATCAGGCAATCGGTTGTTTCTTGTTTCAGGTCAGCCGACATTTAGTGATACATTACCTTCACAGAAGGATTCGAGTCACTGCTCTTCCTGTTTATCTAAGTCAACTGATGATGAGAACAACATACCTAGTGGACATTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGGGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAATGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGATTTTTCCTACCCATTTTTCCACTTTACAATACCTACTTATTTTAAGCTTGATTGTGTTTCATTTGCATAAGATTTGCGTGCCTTTACAGTACAAATTATTGTAATTGAAATGGAAGTATTGTAAATCACTGACTGGAAATGTTTTCCATAGATTGTATTCCATTCCAAAAGTATAACGTGTATTTTTCGTGCATTTCTAATTTAGCATAAATTA]
[+] EMBL CD202408 [AGTTATCAAGTATCACTTCTAAATTCACCGCGGTGGTAAAAAAACGTCTATCGCAAAATCTCAATCAGGGACATCATCTGTCCCTGAGATGCACCAGACACACTGTGAGACATAAAATACTTCACCTATCCTGGCATCCAAAGAAATTCCTTACGGTAGCTATATCAGGCAATCGGTTGTTTCTTGTTTCAGGTCAGCCGACATTTAGTGATACATTACCTTCACAGAAGGATTCGAGTCACTGCTCTTCCTGTTTATCTAAGTCAACTGATGATGAGAACAACATACCTAGTGGACATTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGGGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCT ]
[+] EMBL CD080719 [ ctcggcTCGAGGAACTGCTCTTCCTGTTTATCTAAGTCAACTGATGATGAGAACAACATACCTACTGGACATTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGGGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACANACAATCTCT ]
[+] EMBL AW017026 [ TCTATTTCATTCCAAAGTTCAAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTCGGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTTTCTTCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGACCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTT ]
[-] EMBL CD194522 [ CTATAAGTTCTGACCGGAATAGTGAAAAAGTTCCATGTATAAATTCCTTGTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGTGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAATGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGATTTTTCCTAC ]
[-] EMBL CD074644 [ GTTTCCATCATCAAGAGAAACATTCTCAACTAATTTGAACGATGTTTTACAATGATAATGCTTTTCCTACCATTTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTCATCTCAGGGTTGACATATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATCTCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACACATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAATGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGATTTTTCCTACCCATTTTTCCACTTTACAATACCTACTTATTTTAAGCTTGATTGTGTTTCATTTGCATAAGATTTGCGTGCCTTTACAGTACAAATTATTGTAATTGAAATGGAAGTATTGTAAATCACTGACTGGAAATGTTTTCCATAGATTGTATTCCATTCCAAAAGTATAACGTGTATTTTTCGTGCATTTCTAATTTAGCATAAATTA]
consensusID : consensus_9046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1013 fasta sequence
[CTGAAGATCCAAGTCTTTCACAAAATCTGGGATTTTTCGCTGAGTGTTATTGCAAGTTTATCAGATTTTCGCTTCGGTCATACTGGAAATTATCTTTTAGCCAGAGATTATTTAACATTGAAAATTTGGGATATGAGAATGGGCGATCGACCGTGTGAAATTTATTCAGTTTATGAACCATTTCGATCAC-A-ACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTCTGATGATGATAGGTATGCAATAACGGGTTCTTACGGCAATCTCTTTCATATATTTGACCGTCACAATGGCTCTGATTGGTTGTATGACCTTGACGACTCAAGCAATCCTTACGACACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTTTATGTCTCCCGATGATCCTATTGGAAGTCGGTTAGGTTTATCTTCAATTTTCGTAGCACCATTGGATGCTGTGGAAGCTCTCTTTCCAGAAACTACAAGTCAAACCAGTTCGCATAGCAGCTGTAGTGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTTAGAGGTATCACCTGGCAGAACAAAGCTATCTAACTGTCAACTAGATGATCTCAACCCTCCAGAGAATACTCCATCAGCACCCCCAACTGGTTCTAAGCGTCGAGAGCAAATCCTTCCTTCTCGTACTAATAATTCTACTGATTCTCATTGTGCTGTACAAAGTGAACACGAAAAATCCCGTAATTGTCACCACAAAAGTAAACATCGTCATCATAACAGGATCTTTCCACATGACATGGTAGAAAAATGTGGATACGGTGTTAGTTCTTCTTGCACCGTACCGAACTCAAATGATGGTCATGAGTTATCAAGTATCATTCTAAATTCACCGCCTGGTAAAAAAACGTCTATCGCAGAATCTCAATCAGGGACATCAACTGTCCCTGNGATGCACCAGATACACTGTCGACATANAATACTTCACCTATCCTG]
[+] EMBL CD064757 [CTGAAGATCCAAGTCTTTCACAAAATCTGGGATTTTTCGCTGAGTGTTATTGCAAGTTTATCAGATTTTCGCTTCGGTCATACTGGAAATTATCTTTTAGCCAGAGATTATTTAACATTGAAAATTTGGGATATGAGAATGGGCGATCGACCGTGTGAAATTTATTCAGTTTATGAACCATTTCGATCACGAGACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTCTGATGATGATAGGTATGCAATAACGGGTTCTTACGGCAATCTCTTTCATATATTTGACCGTCACAATGGCTCTGATTGGTTGTATGACCTTGACGACTCAAGCAATCCTTACGACACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTTTATGTCTCCCGATGATCCTATTG ]
[+] EMBL CD189381 [ GAATGGGCGATCGACCGTGTGAAATTTATTCAGTTCATGAACCATTTCGATCAC A ACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTCTGATGATGATAGGTATGCAATAACGGGTTCTTACGGCAATCTCTTTCATATATTTGACCGTCACAATGGCTCTGATTGGTTGTATGACCTTGACGACTCAAGCAATCCTTACAACACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTTTATGTCTCCCGATGATCCTATTGGAAGTCGGTTAGGTTTATCTTCAATTTTCGTAGCACCATTGGATGCTGTGGAAGCTCTCTTTCCAGAAACTACAAGTCAAACCAGTTCGCATAGCAGCTGTAGTGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTT ]
[+] EMBL CD148714 [ TGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTTAGAGGTATCACCTGGCAGAACAAAGCTATCTAACTGTCAACTAGATGATCTCAACCCTCCAGAGAATACTCCATCAGCACCCCCAACTGGTTCTAAGCGTCGAGAGCAAATCCTTCCTTCTCGTACTAATAATTCTACTGATTCTCATTGTGCTGTACAAAGTGAACACGAAAAATCCCGTAATTGTCACCACAAAAGTAAACATCGTCATCATAACAGGATCTTTCCACATGACATGGTAGAAAAATGTGGATACGGTGTTAGTTCTTCTTGCACCGTACCGAACTCAAATGATGGTCATGAGTTATCAAGTATCATTCTAAATTCACCGCCTGGTAAAAAAACGTCTATCGCAGAATCTCAATCAGGGACATCAACTGTCCCTGNGATGCACCAGATACACTGTCGACATANAATACTTCACCTATCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9046#0 AGTTATCAAGTATCACTTCTAAATTCACCGCGGTGGTAAAAAAACGTCTATCGCAAAATC 60
consensus_9046#1 ---------------------------------CTGAAGATCCAAGTCTTTCACAAAATC 27
* * * * **** ** *******
consensus_9046#0 TCAATCAGGGACATCATCTGTCCCTGAGATGCACCAGACACACTGTGAGACATAAAATAC 120
consensus_9046#1 T------GGGA-----TTTTTCGCTGAG-TGTTATTGCAAGTTTATCAGATTTT---CGC 72
* **** * * ** ***** ** * * * * *** * *
consensus_9046#0 TTCACCTATCCTGGCATCCAAAGAAATTCCTTACGGTAGCTATATCAGGCAATCGGTTGT 180
consensus_9046#1 TTCGGTCATACTGGAAATTATCTTTTAGCCAGAGATTATTTAACATTGAAAAT---TTGG 129
*** ** **** * * ** * ** ** * *** ***
consensus_9046#0 TTCTTGTTTCAGGTCAGCCGACATTTAGTGATACATTACCTTCACAGAAGGATTCGAGTC 240
consensus_9046#1 GATATGAGAATGGGCGATCGACCGTGTGAAATTTATTCAGTTTAT-GAACCATTTCGATC 188
** ** * **** * * ** *** ** * *** *** **
consensus_9046#0 ACTGCTCTTCCTGTT-TATCTAAGTCA-ACTGATGATGAGAACAACATACCTAGTGGACA 298
consensus_9046#1 ACAACTTTGTATGTTGTATGAAAATGATGCTATTTTTGATAAATTCTTATGTGGATGGTC 248
** ** * **** *** ** * * ** * *** ** * ** * * *
consensus_9046#0 TTGTGAAGCGAGTTCCACACCTATAAGAGATAAAGTAACTTCTATTTCATTCCAAAGTTC 358
consensus_9046#1 TGATGATGATAGGTATGCA---ATAACGGGTTC--TTACGGCAATCTCTTTCATATATTT 303
* *** * ** * ** **** * * * ** * ** ** *** * **
consensus_9046#0 AAATGTGAAAGCTGCTAAACGTCGCCGACGACGTCATCATCAACTAGATAGTTCAAATTC 418
consensus_9046#1 GACCGTCACAATGGCT--------CTGATTG-GTTGT-ATGACCTTGACGACTCAAGCAA 353
* ** * * *** * ** ** * ** * ** ** ****
consensus_9046#0 GGTTAATGCTTTCCCTAACCTAACAGATAGGATAGAAAATCATATTTCAGATATTGATTT 478
consensus_9046#1 TCCTTACGA---CACGAATTCTGCATGTAATACTGGGAATTACTTATCACCTAAACGTTT 410
* * * * * ** ** ** * * *** * * *** ** ***
consensus_9046#0 TCT---TCCTGATGCTTCTGTGGTTTGTGGAATGGATTATGTAACAAATTATGAAGCTGA 535
consensus_9046#1 TATGTCTCCCGATGATCCTATTGGAAGTCGGTTAGGTTTATCTTCAATTTTCGTAGC--A 468
* * *** **** * ** * * ** * * * ** *** ** * *** *
consensus_9046#0 CCATGAAGATAATTATAATGAGCAACACACTTCTGAAGCGCAACTAGATTCTATAAGTTC 595
consensus_9046#1 CCAT-----TGGATGCTGTGGA-AGCTCTCTTTCCAGAAACTAC-AAGTCAAACCAGTTC 521
**** * * ** * * * *** * * ** * * * *****
consensus_9046#0 ---TGACCGGAATAGTGAAAA-AGTTCCATGTATAAATT---CCTTGTTTCCATCATCAA 648
consensus_9046#1 GCATAGCAGCTGTAGTGATAATAATGATTGGAATAAAGTTGACGATAGTTCGAACACCTT 581
* * * ****** ** * * * ***** * * * *** * ** *
consensus_9046#0 GAGAAACATTCTCAACTAATTTGAACGATGTTTTACAAT-GATAATGCTTTTCCTACCAT 707
consensus_9046#1 -AGAGGTATCACCTGGCAGAACAAA-GCTATCTAACTGTCAACTAGATGATCTCAACCCT 639
*** ** * * ** * * * * ** * * * * * *** *
consensus_9046#0 TTTGATTGTCTTCCTTACCATGTCTCTAATTTTTGCCTGACTTC-ATCTCAGGGTTGACA 766
consensus_9046#1 CCAGAGAATACTCCAT-CAGCACCCCCAACTGGTTCTAAGCGTCGAGAGCAAATCCTTCC 698
** * *** * * * * ** * * * * ** * ** *
consensus_9046#0 TATTTCCATTATCAATTTCTAAAGCATCAAAAGTGTTTTTACAATTGCTGGAGGAGTATC 826
consensus_9046#1 TTCTCGTACTAATAATTCTACTGATTCTCATTGTGCTGTACAAAGTGAACACGAAAAATC 758
* * * ** **** * *** * * ** ** * * ***
consensus_9046#0 TCATTTATTCTGGGATAAATATACAATAATAGTACATGCATAATTACATACGCACATACA 886
consensus_9046#1 CCGTAATTGTCACCACAAAAGTA----AACATCGTCATCATAACAGGATCTTTCCACATG 814
* * * * *** ** ** * ***** ** ** *
consensus_9046#0 CATATACAGGCGGGAAGAGAGACATGCGTTTAGACACAAACAATCTCTTCCCTGTACAAA 946
consensus_9046#1 -ACAT-------GGTAGAAAAATGTG-GATACGGTGTTAGTTCTTCTTGCACCGTACCGA 865
* ** ** *** * * ** * * * * * * * * **** *
consensus_9046#0 TGCTGACTCCCGACATCATGTTACGACGCTGCTATTTTAATGTTCTCTATTGATGGGGAT 1006
consensus_9046#1 ACTCAAATGATGGTCATGAGTTATCAAG-TATCATTCTAAATTCACCGCCTGGTAAAAAA 924
* * * **** * * * *** *** * * ** * *
consensus_9046#0 TTTTCCTACCCATTTTTCCACTTTACAATACCTACTTATTTTAAGCTTGATTG--TGTTT 1064
consensus_9046#1 ACGTCTATCGCAGAATCTCAATCAGGGACATCAACTGTCCCTGNGATGCACCAGATACAC 984
** * ** * ** * * * * *** * * * * *
consensus_9046#0 CATTTGCATAAGATTTGCGTGCCTTTACAGTACAAATTATTGTAATTGAAATGGAAGTAT 1124
consensus_9046#1 TGTCGACATANAATACTT-CACCTATCCTG------------------------------ 1013
* **** ** *** * * *
consensus_9046#0 TGTAAATCACTGACTGGAAATGTTTTCCATAGATTGTATTCCATTCCAAAAGTATAACGT 1184
consensus_9046#1 ------------------------------------------------------------
consensus_9046#0 GTATTTTTCGTGCATTTCTAATTTAGCATAAATTA 1219
consensus_9046#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||