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Schistosoma mansoni
cluster # 9054 cluster # 9054       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9054#0 length = 882 sequences # 3  
consensus_9054#1 length = 537 sequences # 5  

consensusID : consensus_9054#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 882
fasta sequence
                              [TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTATTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACCAAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGTTAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATTTACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGCTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATACACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTCCATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTGAACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCCCACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT]

[-] EMBL CD065626             [TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTATTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACCAAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGTTAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATTTACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD190176             [                                                                                                                                                                                                                                                                                          AGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGCTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACA                                                                                                                                                                                                                                     ]
[+] EMBL CD115490             [                                                                                                                                                                                                                                                                                                                                                                           atCACCTAAAGTTCC  AAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAGCCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTACAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGTGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATACACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTCCATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTGAACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCCCACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT]


>consensus_9054#0 TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTA TTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACC AAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGT TAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATT TACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAA TGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAG CTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATA TACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCG TTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATT GTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATG TTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATA CACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTC CATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTG AACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCC CACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT



consensusID : consensus_9054#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 537
fasta sequence
                              [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA]

[+] EMBL CD194482             [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTC                                                                                                                                                                  ]
[+] EMBL CD194545             [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACAAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGCCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGT                                                                                                                                                                                     ]
[-] EMBL CD072196             [                                                                                                                                                       TGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAA                                                                                                                       ]
[-] EMBL CD194358             [                                                                                                                                                             AGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA]
[+] EMBL CD194546             [                                                                                                                                                                                                                                                                                                                                                                                                         AAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTNTATACAAAGATACACACATTANAGGAAGTCCATTCCCTtgt ]


>consensus_9054#1 CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTAC CATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTG GGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTA CAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTC AGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATG GTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAG ATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATT ATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCAT ATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9054#0      TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTA 60
consensus_9054#1      ------------------------------------------------------------
                                                                                  

consensus_9054#0      TTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACC 120
consensus_9054#1      ------------------------------------------------------------
                                                                                  

consensus_9054#0      AAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGT 180
consensus_9054#1      -------CAAATAATAGT--AAACCGAAACCAAC-TGTAACAGTAAAATCTCCAAACGGT 50
                             *   * ** **   **  *** *  *  **    * *   ***   ***  **

consensus_9054#0      TAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATT 240
consensus_9054#1      ----ATGCGTGTACCATGCACT---TTAGCTGAAAGCGTAGATGGATATACACCTTCCTT 103
                             * ** **** * *       * ***  * *** * ***  *  ** **   **

consensus_9054#0      TACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAA 300
consensus_9054#1      TACACCAACTGTTGTTGGGCCTCATACTGTTGCT---------GTTGAA---------GT 145
                      ****  *  * **   *   **  *  *  ***          ******           

consensus_9054#0      TGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAG 360
consensus_9054#1      TGGAGGTGTACCAGTCAAA--GGTAGTCCATT-TCGTACAAACGCTATTC-CACCTGCTG 201
                      ** ***** ******   *  *  *** * *  *  *    * * ** *   ** **  *

consensus_9054#0      CTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATA 420
consensus_9054#1      CAGTGC-----AAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCA-G 255
                      *  * *     ***  ** *   *  ** *   ** * *    *  * *   * *  *  

consensus_9054#0      TACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCG 480
consensus_9054#1      CACCTA------TTTCTGGACCTGAAGCAGC--AGCTTTG-------------GTCCGCG 294
                       *****       **   **  ***** ***  * * * *             ** ****

consensus_9054#0      TTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATT 540
consensus_9054#1      CTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATA 354
                       ** ****   **  *  *   **  **    **  * *   *  * ****** * *** 

consensus_9054#0      GTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATG 600
consensus_9054#1      GTCAAGATGCTCCACCTGCTCCACTAAGCGTCA---CAATTGAAGGACCTGCA---GAAG 408
                      ** ** * ***  ** ** *    *  *  ***     *  ** * * *** *   ** *

consensus_9054#0      TTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATA 660
consensus_9054#1      CTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTG 468
                       *   **  **    * ****   * ********** *   ** * ****  * * * * 

consensus_9054#0      CACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTC 720
consensus_9054#1      AACCAGGACCATAT---ATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTC 525
                       ********* ***   * **** * ** ** * ***  **  * *  **  * * ****

consensus_9054#0      CATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTG 780
consensus_9054#1      CATTCCCTGTAA------------------------------------------------ 537
                      ****    ***                                                 

consensus_9054#0      AACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCC 840
consensus_9054#1      ------------------------------------------------------------
                                                                                  

consensus_9054#0      CACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT 882
consensus_9054#1      ------------------------------------------
                                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)