These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 882 fasta sequence [TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTATTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACCAAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGTTAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATTTACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGCTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATACACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTCCATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTGAACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCCCACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT] [-] EMBL CD065626 [TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTATTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACCAAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGTTAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATTTACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGC ] [-] EMBL CD190176 [ AGTTGAATGCAGAGACAATGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAGCTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACA ] [+] EMBL CD115490 [ atCACCTAAAGTTCC AAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATATACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAGCCTAGTAATCCAGGAAAAGTACGCGTTTTTGGTCCAGGTGTACAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATTGTAAACAGGCTGGACATGGTAATGTTGTGATCAGTGTCACCGATGAAGCTGGACGTGATGTTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATACACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTCCATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTGAACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCCCACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT] consensusID : consensus_9054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 537 fasta sequence [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA] [+] EMBL CD194482 [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACCAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTC ] [+] EMBL CD194545 [CAAATAATAGTAAACCGAAACCAACTGTAACAGTAAAATCTCCAAACGGTATGCGTGTACCATGCACTTTAGCTGAAAGCGTAGATGGATATACACCTTCCTTTACACAAACTGTTGTTGGGCCTCATACTGTTGCTGTTGAAGTTGGAGGTGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGCCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGT ] [-] EMBL CD072196 [ TGTACCAGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAA ] [-] EMBL CD194358 [ AGTCAAAGGTAGTCCATTTCGTACAAACGCTATTCCACCTGCTGCAGTGCAAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCAGCACCTATTTCTGGACCTGAAGCAGCAGCTTTGGTCCGCGCTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATAGTCAAGATGCTCCACCTGCTCCACTAAGCGTCACAATTGAAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTCCATTCCCTGTAA] [+] EMBL CD194546 [ AAGGACCTGCAGAAGCTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTGAACCAGGACCATATATTGTAAATGTTNTATACAAAGATACACACATTANAGGAAGTCCATTCCCTtgt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9054#0 TCCAAGTGAAGCAAGAATTGATTGTACAGATAATGGAGATGGATCAGCCACTGTAGCTTA 60 consensus_9054#1 ------------------------------------------------------------ consensus_9054#0 TTGGCCAACAGCTCCTGGTGAATATGCAGTTCACATTTTATGTAATGATGAAAATATACC 120 consensus_9054#1 ------------------------------------------------------------ consensus_9054#0 AAAATCTCCTTTCATGGTTCCAATTGAACCAGATATGGGTAAATGTGATCCTGAAAGAGT 180 consensus_9054#1 -------CAAATAATAGT--AAACCGAAACCAAC-TGTAACAGTAAAATCTCCAAACGGT 50 * * ** ** ** *** * * ** * * *** *** ** consensus_9054#0 TAAAGCACATGGACCAGGTATAATGCCAACTGGGAACGTTGCTGGTCAACCAACTGAATT 240 consensus_9054#1 ----ATGCGTGTACCATGCACT---TTAGCTGAAAGCGTAGATGGATATACACCTTCCTT 103 * ** **** * * * *** * *** * *** * ** ** ** consensus_9054#0 TACAGTAGATATTAGAGATTCTGGTGGTCCTGCCCCATTAACAGTTGAATGCAGAGACAA 300 consensus_9054#1 TACACCAACTGTTGTTGGGCCTCATACTGTTGCT---------GTTGAA---------GT 145 **** * * ** * ** * * *** ****** consensus_9054#0 TGAAGGTGAACCAGTTGCACTGAAAGTTCGTGATAATGGCGATGGTACTTATACATGTAG 360 consensus_9054#1 TGGAGGTGTACCAGTCAAA--GGTAGTCCATT-TCGTACAAACGCTATTC-CACCTGCTG 201 ** ***** ****** * * *** * * * * * * ** * ** ** * consensus_9054#0 CTATACACCTAAAGTTCCCAAAAAAACACACAGTTCTTGTTTCCTACGGTGGAGTCAATA 420 consensus_9054#1 CAGTGC-----AAGAGCCTATCTATCCAAAAGATTTTGGACGTCAGCAGGCTACTTCA-G 255 * * * *** ** * * ** * ** * * * * * * * * consensus_9054#0 TACCTAGAAGTCCTTTCAGAGTTGAAGTAGCTGAACCTAGTAATCCAGGAAAAGTACGCG 480 consensus_9054#1 CACCTA------TTTCTGGACCTGAAGCAGC--AGCTTTG-------------GTCCGCG 294 ***** ** ** ***** *** * * * * ** **** consensus_9054#0 TTTTTGGTCCAGGTGTAGAAAATGTTACTAGAGGTCAACCAACCTATTTCACAGTAGATT 540 consensus_9054#1 CTTATGGTGACGGACTTTATCGTGCAACAGCTGGAAAGCAGGCGAAATTCACAATCGATA 354 ** **** ** * * ** ** ** * * * * ****** * *** consensus_9054#0 GTAAACAGGCTGGACATGGTAATGTTGGGATCAGTGTCACCGATGAAGCTGGACGTGATG 600 consensus_9054#1 GTCAAGATGCTCCACCTGCTCCACTAAGCGTCA---CAATTGAAGGACCTGCA---GAAG 408 ** ** * *** ** ** * * * *** * ** * * *** * ** * consensus_9054#0 TTGCTATGGATACACAAGATATGAGAGATGGAACATTTAAAGTTGCTTATACAGCTAATA 660 consensus_9054#1 CTAAAATAAATTATAATGATAACGGCGATGGAACATGTGGCGTAGATTATTTACCAACTG 468 * ** ** * **** * ********** * ** * **** * * * * consensus_9054#0 CACCAGGACCTTATTATACTGTACAAGTATTTTTCAATAATCAAGAAGTTCCACGTAGTC 720 consensus_9054#1 AACCAGGACCATAT---ATTGTAAATGTTTTATACAAAGATACACACATTAAAGGAAGTC 525 ********* *** * **** * ** ** * *** ** * * ** * * **** consensus_9054#0 CATTTAAAGTACCTGTTAAACCAAATATCGATATGTCGAAAATTCATGTTGAAAATCTTG 780 consensus_9054#1 CATTCCCTGTAA------------------------------------------------ 537 **** *** consensus_9054#0 AACCAAATATCACTACTGGTGTACCAACGGAGTTTGATGTAATAACTGCGGGTGCAGGCC 840 consensus_9054#1 ------------------------------------------------------------ consensus_9054#0 CACCAAATAATAGCTAACCGAAACCAACTGTAACAGTAAAAT 882 consensus_9054#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||