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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence
[AATTCACATTTTCATGTTGCATTAACTGATTTCGGTTGTGCTATTCGAACTGGACATCATCATCATCATCATCGTATTGATGGTAATAATAATGAAGAAGAATATCTGAATCATAGTGGAAATTTGGCATTATTAGCTCCAGAAATAGTACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGAACTAATGCTGATGAGATTGCCGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTNNNNNNNNNNNNNNNAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATNNNNNNNNNNNNNNNNNNNNCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTTACTCATAAGG]
[+] EMBL CD140795 [AATTCACATTTTCATGTTGCATTAACTGATTTCGGTTGTGCTATTCGAACTGGACATCATCATCATCATCATCGTATTGATGGTAATAATAATGAAGAAGAATATCTGAATCATAGTGGAAATTTGGCATTATTAGCTCCAGAAATAGTACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGAACTAATGCTGATGAGATTGCCGAT ]
[+] EMBL CD081018 [ CTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTNNNNNNNNNNNNNNNAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATNNNNNNNNNNNNNNNNNNNNCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTTACTCATAAGG]
consensusID : consensus_9059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[CCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCACCAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTACTCATAAAGGT]
[-] EMBL CD074844 [CCAAAAATAATGACATGGATTTTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGATATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTTAAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCACCAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTACTCATAAAGGT]
consensusID : consensus_9059#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 491 fasta sequence
[ATTTCGGCACGAGGGCCTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAAATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGGT]
[+] EMBL CD081464 [ATTTCGGCACGAGGGCCTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAAATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGG ]
[-] EMBL CD074804 [ TTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAGATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGTGATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGGT]
[-] EMBL CD075289 [ CTAAATCGCTTATTCTTTTATGCTTATTTATTGACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTCATTTACAGTCATTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGGT]
consensusID : consensus_9059#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[GAGGGTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAGATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTNNNNNNNNNNNNNNNNNNNNNNTTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGG]
[+] EMBL CD080978 [GAGGGTTTCTTGTTTTAAAATATTTTCATTCTTTTAATTGACTTTTAGATTGGTTCTTTGACCGCAGAGTTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTTNNNNNNNNNNNNNNNNNNNNNNNAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAATGGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAATATTGTACAACATGTGTTGGATTCCTAACTACTAATATTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGCTTATTTATTTACTACTTTCTTCATAATCCCTAATGTNNNNNNNNNNNNNNNNNNNNNNTTATATTTTACAGACTCTGCATATAGTGTCATCCTGACTTACTCATAAAGG]
consensusID : consensus_9059#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[TCGCGGCCACAAATTCGGCACGAGGGGCATTATTCAGCTCCAGAAATAGCACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTNTGCCTGAACTTCCACATGAAGCACCAAAAATATGACATGGATTTACATCAATGTC]
[+] EMBL CD077580 [TCGCGGCCACAAATTCGGCACGAGGGGCATTATTCAGCTCCAGAAATAGCACAAATCATTGATTCACTTAAAGATAATTCAAACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTAATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAACTATACTGAAGATTCTNTGCCTGAACTTCCACATGAAGCACCAAAAATATGACATGGATTTACATCAATGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 ------------------------------------------------------------
consensus_9059#0 AATTCACATTTTCATGTTGCATTAACTGATTTCGGTTGTGCTATTCGAACTGGACATCAT 60
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 ------------------------------------------------------------
consensus_9059#0 CATCATCATCATCGTATTGATGGTAATAATAATGAAGAAGAATATCTGAATCATAGTGGA 120
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 ------------------------------------------------------------
consensus_9059#0 AATTTGGCATTATTAGCTCCAGAAATAGTACAAATCATTGATTCACTTAAAGATAATTCA 180
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 ------------------------------------------------------------
consensus_9059#0 AACAATATTATAACTAATAAAGATTATAAACATTCAGATATATGGGCAATTGCTACATTA 240
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 ------------------------------------------------------------
consensus_9059#0 ATTTATCCTTTATTTGGAATATCTAATCCATTTGTTGATGGAACATTTTCTTCAGTAAAC 300
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 ---------------------------------------CCAAAAATAATGACATGGATT 21
consensus_9059#0 TATACTGAAGATTCTTTGCCTGAACTTCCACATGAAGCACCAAAAATAATGACATGGATT 360
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ------------------------------------------------------------
consensus_9059#3 ------------------------------------------------------------
consensus_9059#1 TTACATCAATGTCTTAAACGTAATCCATCCGAAAGACCTAATGCTGATGAGATTGCAGAT 81
consensus_9059#0 TTACATCAATGTCTTAAACGTAATCCATCCGAAAGAACTAATGCTGATGAGATTGCCGAT 420
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 ----------------------------ATTTCGGCACGAGG---GCCTTTCTTGTTTTA 29
consensus_9059#3 --------------------------------------GAGG---G--TTTCTTGTTTTA 17
consensus_9059#1 ATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTT 141
consensus_9059#0 ATTTTGCATACTTGGTGTCTTATTCGACATTTTCACACTAGACAAGAAGTTGATATTTTT 480
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 AAATATTTTCATT--CTTTTAATTGACTTTT------AAATTGGTTCTTTGACCGCAGAG 81
consensus_9059#3 AAATATTTTCATT--CTTTTAATTGACTTTT------AGATTGGTTCTTTGACCGCAGAG 69
consensus_9059#1 AAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTTTGACCGCAGAG 201
consensus_9059#0 AAAGATTTTTCTCAATATCCAACAAATCTTATGACAGATATTGGTTCTNNNNNNNNNNNN 540
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 TTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGT 141
consensus_9059#3 TTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTTNNNNNNNNNNNNNNN 129
consensus_9059#1 TTTAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCACCAATCGTTTATGT 261
consensus_9059#0 NNNAAAAATTCGACAAAATCCCATCAAATACAAAGTAATAAGCTCAACAATCGTTTATGT 600
consensus_9059#4 ------------------------------------------------------------
consensus_9059#2 GATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 201
consensus_9059#3 NNNNNNNNAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 189
consensus_9059#1 GATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 321
consensus_9059#0 GATCTCCTAAATGTATGTTGGGCAGGTGATTGGTTATCTGGAGCCGCTCGTCCTCCAAAT 660
consensus_9059#4 -------------------------------------TCGCGGCCACAAATTCGGCACGA 23
* *** * * * **
consensus_9059#2 GGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAAT 261
consensus_9059#3 GGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAAT 249
consensus_9059#1 GGTGTACGCTCTCTGTTTTATTCACGAGCCACTCCTGGACGTTTGGCGCTTTGTTTAAAT 381
consensus_9059#0 GGTGTACGCTCTCTGT----------------------------GGCGCTTTGTTTAAAT 692
consensus_9059#4 GGGGCAT-TATTCAGCTCCAGAAATAGCACA---------AATCATTGATTCACTTAAAG 73
** * * ** * * ** *****
consensus_9059#2 ATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATA 321
consensus_9059#3 ATTGTACA------------------------ACATGTGTTGGATTCCTAACTACTAATA 285
consensus_9059#1 ATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATA 441
consensus_9059#0 ATTGTACACCAATTGGAGTGTTTCGATTTCCAACATGTGTTGGATTCCTAACTACTAATA 752
consensus_9059#4 ATAATTCA-----------------------AACA-ATATT--ATAACTAATAAAGATTA 107
** * ** *** * ** ** **** * * **
consensus_9059#2 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 381
consensus_9059#3 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 345
consensus_9059#1 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 501
consensus_9059#0 TTAGTAGTCTGACTTCTTGAAAAATAATTCGAAAAGACTAAATTGCTTATTCTTTTATGC 812
consensus_9059#4 TAAACATTCAGATATATGGGCAATTGCTACATTAA---TTTATCCTTTATTTGGAATATC 164
* * * ** ** * * * ** * * * ** * ** ***** *
consensus_9059#2 TTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTC-ATTTACAGTCAT 440
consensus_9059#3 TTATTTATTTACTACTTTCTTCATAATCCCTAATGTNNNNNNNNNNN-NNNNNNNNNNNT 404
consensus_9059#1 TTATTTATTTACTACTTTCTTCATAATCCCTAATGTTATCGTCTTTC-ATTTACAGTCAT 560
consensus_9059#0 TTATTTATTTACTACTTTCTTCATAATNNNNNNNNNNNNNNNNNNNNCATTTACAGTCAT 872
consensus_9059#4 TAATCCATTTGTTGATGGAA-CATTTTCTTCAGTA-AACTATACTGAAGATTCTNTGCCT 222
* ** **** * * *** * *
consensus_9059#2 TATATTTTACAGACTCTGCATATAGTGTCATCCTGACTT-ACTCATAAAGGT- 491
consensus_9059#3 TATATTTTACAGACTCTGCATATAGTGTCATCCTGACTT-ACTCATAAAGG-- 454
consensus_9059#1 TATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTT-ACTCATAAAGGT- 611
consensus_9059#0 TATATTTTACAGACTCTGCATATAGTGTCATCCTGTCTTTACTCATAAGG--- 922
consensus_9059#4 GAACTTCCACATGAAGCACCAAAAATATGACATGGATTT---ACATCAATGTC 272
* ** *** * * * * * * * ** *** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||