These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 933 fasta sequence [GATTGGGCGCTCCAAATGCTTCATCTTTTCCACTGTTTTTGATTGATTGACCGAATGACAGGAGTTTCGTGTGTGTTATTACTCAATTCATCTGAAGGAAACAGTGATCCACAGATTCTTGAGAATCTTATGAAGAAATTAGAACTTCTTGGTGCACAAAAGTGCGGTCGAATACATATAGAAAGCGCAGTTTACTTTTCAAACTTTTCCAGGTCTCAGTGTAAAACATTTCAAGTTCTCACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCA-AACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCAATGTTTATTTGTTTTTAATTAATAAAATATTATA] [+] EMBL CD079290 [GATTGGGCGCTCCAAATGCTTCATCTTTTCCACTGTTTTTGATTGATTGACCGAATGACAGGAGTTTCGTGTGTGTTATTACTCAATTCATCTGAAGGAAACAGTGATCCACAGATTCTTGAGAATCTTATGAAGAAATTAGAACTTCTTGGTGCACAAAAGTGCGGTCGAATACATATAGAAAGCGCAGTTTACTTTTCAAACTTTTCCAGGTCTCAGTGTAAAACATTTCAAGTTCTCACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCA AACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCA ] [+] EMBL CD189851 [ ACATTTCAAGTTCTCACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCA AACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAA AATACC ] [+] EMBL CD081481 [ gagcctTATTC GGCACGCAGAACAGCTCTTGTTGCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACTATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCAATGTTTATTTGTTTTTAATTAATAAAATATTAT ] [-] EMBL CD075305 [ GGTTGTTTTTCATGCATCCAGCATGATACATNTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCAATGTTTATTTGTTTTTAATTAATAAAATATTATA] consensusID : consensus_9067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 827 fasta sequence [AGGCAACAGCTCTTGTTGCCGATATATCTTTTCGTGCAATTCCCAGGGGTGGCTTAAAANGCCTTTTATCAACGTAAGAAGAAATTAC-AGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT-CAATGTTTATTTGTTTTTAATTAAT-A-AATATTATA] [+] EMBL CD081193 [AGGCAACAGCTCTTGTTGCCGATATATCTTTTCGTGCAATTCCCAGGGGTGGCTTAAAANGCCTTTTATCAACGTAAGAAGAAATTAC AGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTC AATATTCCGTCTAAT AAGCTAAC AGAACATTCCATCT ACTATT AACATAATAACTT C ATGTTTATTTGTTTTT ATTAAT A AATATTA ] [-] EMBL CD075021 [ caGGGT GCTTAAAA GCCTTTTATCAACGTAAGAAGAAATTACAAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTTCCAATGTTTATTTGTTTTTAATTAAT AGAATATTATA] [-] EMBL CD074739 [ GATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTCCTAGCATGCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTTCGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAAACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCAAATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT CAATGTTTATTTGTTTTTAATTAATAA AATATTATA] consensusID : consensus_9067#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [NNNNNNNNNNNNNNNAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTNNNNNNNNCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATGCAGACATATCAACGTTGTTAGACGTTTATCAGGCANACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCCACTCCTTTCAATATTCCGTCTAATAAGCTAACAGGACATTCCATCTACTATTCACATATAACTTCATGTTTATTTGTTTTAATTATAAATATA] [+] EMBL CD080906 [NNNNNNNNNNNNNNNAGTTGAAGCTAAAGGAATAAAGTATCAGTTGGGTGATTTTACAATTAATTTTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGGTGTCTACAGCGATTAATTCTTTATGCTGGTGTTTCTTGGAGCCCAGGATTTNNNNNNNNCTGAAGTTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTGTTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTACCATCTGGAAGGTTTGTTTTCATGCATCCAGCATGATACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCGTTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTAGCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATGCAGACATATCAACGTTGTTAGACGTTTATCAGGCANACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCCACTCCTTTCAATATTCCGTCTAATAAGCTAACAGGACATTCCATCTACTATTCACATATAACTTCATGTTTATTTGTTTTAATTATAAATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9067#1 ------------------------------------------------------------ consensus_9067#2 ------------------------------------------------------------ consensus_9067#0 GATTGGGCGCTCCAAATGCTTCATCTTTTCCACTGTTTTTGATTGATTGACCGAATGACA 60 consensus_9067#1 -----------AGGCAACAGCTCTTGTTGCCGATATATCTTTTCGTGCAATTCCCAGGGG 49 consensus_9067#2 ------------------------------------------------------------ consensus_9067#0 GGAGTTTCGTGTGTGTTATTACTCAATTCATCTGAAGGAAACAGTGATCCACAGATTCTT 120 consensus_9067#1 TGGCTTAAAANGCCTTTTATCAACGTAAGAAGAAATTACAGTTGAAGCTAAAGGAATAAA 109 consensus_9067#2 ------------------------NNNNNNNNNNNNNNNAGTTGAAGCTAAAGGAATAAA 36 consensus_9067#0 GAGAATCTTATGAAGAAATTAGAACTTCTTGGTGCACAAAAGTGCGGTCGAATACATATA 180 * ** * ** *** * consensus_9067#1 GTATCAGTTGGGTGATTTTACAATTAATTTTA-TCACAATATTCATGGGACAGAGTGCTT 168 consensus_9067#2 GTATCAGTTGGGTGATTTTACAATTAATTTTA-TCACAATATTCATGGGACAGAGTGCTT 95 consensus_9067#0 GAAAGCGCAGTTTACTTTTCAAACTTTTCCAGGTCTCAGTGTAAAACATTTCAAGTTCTC 240 * * * * * **** ** * * ** ** * * * *** ** consensus_9067#1 CCGTTAAA-GGATATTTA--ATCGAGGGTG----TCTACAGCGATTAA----TTCTTTAT 217 consensus_9067#2 CCGTTAAA-GGATATTTA--ATCGAGGGTG----TCTACAGCGATTAA----TTCTTTAT 144 consensus_9067#0 ACATCAACTGAATATCCAGCATCATGTTTTGTATTCTCTGACAATCAAACAGCTCTTGTT 300 * * ** * **** * *** * * *** * ** ** **** * consensus_9067#1 GCTGGTGTTTCTT---------------GGAGCCCAGGA---TTTCCTAGCATGCTGAAG 259 consensus_9067#2 GCTGGTGTTTCTT---------------GGAGCCCAGGA---TTTNNNNNNNN-CTGAAG 185 consensus_9067#0 GCCGATATATCTTTTCGTGAATTCCCAGGGTGCTTAAAAGCCTTTTATCAACGTAAGAAG 360 ** * * * **** ** ** * * *** **** consensus_9067#1 TTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTG 319 consensus_9067#2 TTATTCGTGCTTTAATCTTTTCCAGTTCTCCATGCTGTTTTCCTCTTTTAATGGAATTTG 245 consensus_9067#0 AAATTACAAGTTGAAGCTAAAGGAATAAAGTAT-CAGTTGGGTGATTTTACAATTAATT- 418 *** ** ** ** * * ** * *** ***** * ** consensus_9067#1 TTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTAC----CATCTGG--AAGGTTTGTT 373 consensus_9067#2 TTGTTGAGATCTCTTTTGAACTCATTAAGCTTGTTAC----CATCTGG--AAGGTTTGTT 299 consensus_9067#0 TTATCACAATATTCATGGGACAGAGTGCTTCCGTTAAAGGATATTTAATCGAGGTTTGTT 478 ** * ** * * * ** * * **** ** * ********* consensus_9067#1 TTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCC-AA 432 consensus_9067#2 TTCATGCATCCAGCATGATACATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA 359 consensus_9067#0 TTCATGCATCCAGCATGATACATTTGTGTCGTGACGTATTAAAAGCTTTTATTACCC-AA 537 ************************** * ** consensus_9067#1 GTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCG 492 consensus_9067#2 GTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCG 419 consensus_9067#0 GTATTACCGGACATTTGTCCACCAGCTAATAGTTCGACAGAACATATATTCAGCCCATCG 597 ************************************************************ consensus_9067#1 TTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTA 552 consensus_9067#2 TTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTA 479 consensus_9067#0 TTTTTACAAGCTGTTGAAACGGGCACATTTGATGCACCACGTTGGCCGCCTAGTCAATTA 657 ************************************************************ consensus_9067#1 GCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTT 612 consensus_9067#2 GCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCAT----------------- 522 consensus_9067#0 GCTTTCCCAGTGGAAAATAACTTCCTGCAAGATGATTCTCCATTATCTCATGTTTGCGTT 717 ******************************************* consensus_9067#1 CGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAA 672 consensus_9067#2 ---------------------GCAGA-CATATCAACGTTGTTAGACGTTTATCA-GGCAN 559 consensus_9067#0 CGACTAACAATGACACAATATGCAGAACATATCAACGTTGTTAGACGTTTATCAAGGCAA 777 ***** *************************** **** consensus_9067#1 ACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCA 732 consensus_9067#2 ACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCCACTCCTTTC 619 consensus_9067#0 ACTGTAAACACACCAAGTACGCTTGCTACAAATGGTTCATCATCATATGCAACTCCTTCA 837 ************************************************** ******* consensus_9067#1 AATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT 792 consensus_9067#2 AATATTCCGTCTAAT-AAGCTAACAGGA-CATTCCATCTA-CTATTCA-CATA-TAACTT 674 consensus_9067#0 AATATTCCGTCTAATCAAGCTAACAAGAACATTCCATCTAACTATTCAACATAATAACTT 897 *************** ********* ** *********** ******* **** ****** consensus_9067#1 CAATGTTTATTTGTTTTTAATTAATAAA-TATTATA 827 consensus_9067#2 CA-TGTTTATTTGTTTT-AATTA-TAAA-TATA--- 703 consensus_9067#0 CAATGTTTATTTGTTTTTAATTAATAAAATATTATA 933 ** ************** ***** **** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||