|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1017 fasta sequence
[NACTTCGGCACGAGGTCGACCTTAAGTGCTCTCAACCTCCAACATTGTCGATACGCCTGGAGCTTTGCCTATGTATGTTATTAGTCTTCGTCCGCAGTTTGAATGAACAGTCTTGTTGGACACACGATCTAGCAAAGCTAGTCCGATTTCCTCTAAAACCAACTATTCATCCCAATAAAATTTGTCATGCCAAAAATCGAGTATATTGGTCGTCCATCTTTACACTTCTACGGCAAGCTCCTGTCAGAAATTGCCAAAAACCTTAAAAATCGCGCCAAGGGTAGAGTGGTAATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA-CGTCCATGTCAACAA-AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAACAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTATGAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATGTTTGTAAAAAAAAAAAAAAA]
[+] EMBL CD080761 [NACTTCGGCACGAGGTCGACCTTAAGTGCTCTCAACCTCCAACATTGTCGATACGCCTGGAGCTTTGCCTATGTATGTTATTAGTCTTCGTCCGCAGTTTGAATGAACAGTCTTGTTGGACACACGATCTAGCAAAGCTAGTCCGATTTCCTCTAAAACCAACTATTCATCCCAATAAAATTTGTCATGCCAAAAATCGAGTATATTGGTCGTCCATCTTTACACTTCTACGGCAAGCTCCTGTCAGAAATTGCCAAAAACCTTAAAAATCGCGCCAAGGGTAGAGTGGTAATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAANAATCTACTCACTCTNTAGATATANCACAATCAATGAGAGAAGCTAG ]
[+] EMBL CD182377 [ AATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGC ]
[+] EMBL CD182635 [ AATAAAGGAAACTGAGACAGCAAAATTCAGGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGACCCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAAGCGT CATGTCAACAA AAACCGATATGGCCGCTCCAGATGTT CAGTTAGCTGC ]
[-] EMBL CD182418 [ ATAAAGGAAACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCG ]
[-] EMBL CD161883 [ TCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTTATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGAAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAAGGGGCCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAACAATCAATGAGAGAAGCTAGTGGTTTATTATTGTT ]
[-] EMBL CD074685 [ AAATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCTAGTGAAGCTGAACGTCTAA CGTCCATGTCAACAA AAACCGATATGGCCGCTCCAGATGTTCCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAATGTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAACAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTATGAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACT ]
[-] EMBL AI395546 [ AAGTTGAAAAATCTACTCACTCTTTAGATATACACCAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTATGAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATGTTTGTAAAAAAAAAAAAAAA]
consensusID : consensus_9073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[TTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGACCAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATTTTCAAGTTGGTAGTCTAGTTTCAAAACCACTACCTAATATACTTCGAATATAACTTACTCCTTGTACATATTTCCATTAGTTTGAGGAAATTTTCGTTCTGGTAAGTTATCTTTCTTTGTAATAGTAAATGTTTCTGATTCCTTTTTACTAAAACTACTATTTTTCTTCAAACGATTCAATTCAA]
[+] EMBL CD196678 [TTATTATTGTTAACACCTCACCGTTATGATCCAACAAGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGACCAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTAATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAAACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATTAGCCATATTCTTGATTGTTGATAATACAGTACTTATTTTCAAGTTGGTAGTCTAGTTTCAAAACCACTACCTAATATACTTCGAATATAACTTACTCCTTGTACATATTTCCATTAGTTTGAGGAAATTTTCGTTCTGGTAAGTTATCTTTCTTTGTAATAGTAAATGTTTCTGATTCCTTTTTACTAAAACTACTATTTTTCTTCAAACGATTCAATTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9073#0 NACTTCGGCACGAGGTCGACCTTAAGTGCTCTCAACCTCCAACATTGTCGATACGCCTGG 60
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 AGCTTTGCCTATGTATGTTATTAGTCTTCGTCCGCAGTTTGAATGAACAGTCTTGTTGGA 120
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 CACACGATCTAGCAAAGCTAGTCCGATTTCCTCTAAAACCAACTATTCATCCCAATAAAA 180
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 TTTGTCATGCCAAAAATCGAGTATATTGGTCGTCCATCTTTACACTTCTACGGCAAGCTC 240
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 CTGTCAGAAATTGCCAAAAACCTTAAAAATCGCGCCAAGGGTAGAGTGGTAATAAAGGAA 300
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 ACTGAGACAGCAAAATTCAAGGAGCCATGCTATTACATCTTAAAAAGTGTTGTTCCACTT 360
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 ATGTCCGATAAGACTGATGTTAGATGTAGAGCATGGGGTATACGAGTATTCCGTGGTCGA 420
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 AATCTTGGCTATTGTCTCCTACCGAATACACATGAACCAGATTGGCGTCTTTTGTCACCT 480
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 AGTGAAGCTGAACGTCTAACGTCCATGTCAACAAAAACCGATATGGCCGCTCCAGATGTT 540
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 CCAGTTAGCTGCGTCGCTCAAGCTCCTCCTTTATTGACAATATTTCTACGAAGAAAAAAT 600
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 GTACTTCCACCACCAGTAGTGGAAGAAGCTGAAAAATCTACTCACTCTTTAGATATACAA 660
consensus_9073#1 ------------------------------------------------------------
consensus_9073#0 CAATCAATGAGAGAAGCTAGTGGTTTATTATTGTTAACACCTCACCGTTATGATCCAACA 720
consensus_9073#1 ------------------------TTATTATTGTTAACACCTCACCGTTATGATCCAACA 36
************************************
consensus_9073#0 AGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACGTATGTACCCTCCGTAT 780
consensus_9073#1 AGTTTTAAAGTCCCTATTGAACCGACTTCCGAGGAGAAATCACG---------------- 80
********************************************
consensus_9073#0 GAATGGTCAGCTAAAAAAGGACTAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTA 840
consensus_9073#1 --------------------ACCAATTATAAAGCCAAATTTAGATCGAGATTCTTATTTA 120
** *************************************
consensus_9073#0 ATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAA 900
consensus_9073#1 ATTCGTCGATCTGATACACCTGGCTTGTATTGGCGTGTTCATTTAGCGAAATCTTCAAAA 180
************************************************************
consensus_9073#0 ACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATT 960
consensus_9073#1 ACAGAACAAGATAGTGAAACAGTTTCATAAACAGGAAGTTGTTATCAGAAGAAAGGGATT 240
************************************************************
consensus_9073#0 AGCCATATTCTTGATTGTTGATAATACAGTACTTAT------GTTTGTAAAAAAAAAAAA 1014
consensus_9073#1 AGCCATATTCTTGATTGTTGATAATACAGTACTTATTTTCAAGTTGGTAGTCTAGTTTCA 300
************************************ *** *** * *
consensus_9073#0 AAA--------------------------------------------------------- 1017
consensus_9073#1 AAACCACTACCTAATATACTTCGAATATAACTTACTCCTTGTACATATTTCCATTAGTTT 360
***
consensus_9073#0 ------------------------------------------------------------
consensus_9073#1 GAGGAAATTTTCGTTCTGGTAAGTTATCTTTCTTTGTAATAGTAAATGTTTCTGATTCCT 420
consensus_9073#0 ------------------------------------------
consensus_9073#1 TTTTACTAAAACTACTATTTTTCTTCAAACGATTCAATTCAA 462
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||