These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence [AATCTCGGCACGAGGTCTCGAATCTACGTGTTTCGAAGATGACATTAAATAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGC-AAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTNTACAAACACAAATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGCGGGAGTATTAATTTGATAGTGAAATTTATGAACCAACATTGTACTGCAGATAAACAATCTGCTATCCGGTTTAAAAAACCTTCCCTAGATTCAACTTGCACTTTTGGGTGAATTGAAATACCTACTGATATTTTTGTCTCAAACAATTTTATAACCGTAATACTGT] [+] EMBL CD080740 [AATCTCGGCACGAGGTCTCGAATCTACGTGTTTCGAAGATGACATTAAATAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGC AAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTNTACAAACACAAATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGCGGGAGTAT ] [-] EMBL CD187239 [ TTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCA ] [-] EMBL CD074664 [ AAGAAAATNTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGC AAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTTTACAAACACAAATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGC GGAGTAATAATTTGATAGTGAAATTTATGAACCAACATTGTACTGCAGATAAACAATCTGCTATCCGGTTTAAAAAACCTTCCCTAGATTCAACTTGCACTTTTGGGTGAATTGAAATACCTACTGATATTTTTGTCTCAAACAATTTTATAACCGTAATACTGT] [+] EMBL CD194562 [ TACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCC ] consensusID : consensus_9076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 576 fasta sequence [CGACGACAGACAACGCTAGTGCGTCTCTGCGCTTTCAGTCACATTCATAACTGAGTAACACTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAACTTCGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGNGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGCGAAGGTA] [+] EMBL CD145467 [CGACGACAGACAACGCTAGTGCGTCTCTGCGCTTTCAGTCACATTCATAACTGAGTAACACTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAACTTCGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGNGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAA ] [-] EMBL CD189572 [ GACGACAGACAACGCTAGTGCGTCTCTGCGCTNTCAGTCACATTCATAACTGAGTAACACTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAACTTCGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGCGAAGGTA] consensusID : consensus_9076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAATTTACGTTGGTTTTTTATCCTAGACTTCGAATCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATA] [-] EMBL CD097309 [TGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAATTTACGTTGGTTTTTTATCCTAGACTTCGAATCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATA] consensusID : consensus_9076#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [TTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAAGTATGCGTACAAATGGTAGATGTCAATATTTTTCCTAGTGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTGTATTCGTAACATGGACTGACTGGGACATAAGTACGTGTCTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGC] [+] EMBL CD186774 [TTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAAGTATGCGTACAAATGGTAGATGTCAATATTTTTCCTAGTGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTGTATTCGTAACATGGACTGACTGGGACATAAGTACGTGTCTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9076#0 ------------------------------------------------------------ consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 CGACGACAGACAACGCTAGTGCGTCTCTGCGCTTTCAGTCACATTCATAACTGAGTAACA 60 consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 ------------------------------------------------------------ consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 CTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTT 120 consensus_9076#2 ---------------------------------------------TGCATTCTATGACTT 15 consensus_9076#0 ------------------------------------------AATCTCGGCACGAGGTCT 18 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 CAATACGTTTGCACAAAATAGTCTTACGAATAA------------------------CTT 156 consensus_9076#2 CAATACGTTTGCACAAAATAGTCTTACGAATAATTTACGTTGGTTTTTTATCCTAGACTT 75 consensus_9076#0 CGAATCTACGTGTTTCGAAGATGACATTAAATAGCCTGCTGAAATCATTGAATTTCCTGT 78 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 CGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGT 216 consensus_9076#2 CGAATCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGT 135 consensus_9076#0 CGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACC 138 consensus_9076#3 ----------------------------------------TTTCAAAGTTTCGTGAAACC 20 consensus_9076#1 CGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACC 276 consensus_9076#2 CGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACC 195 ******************** consensus_9076#0 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAA----- 193 consensus_9076#3 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAAGTATG 80 consensus_9076#1 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAA----- 331 consensus_9076#2 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAA----- 250 ******************************************************* consensus_9076#0 ---------------------------------TGCGATGTAGAAAATGCTCCTACTTTG 220 consensus_9076#3 CGTACAAATGGTAGATGTCAATATTTTTCCTAGTGCGATGTAGAAAATGCTCCTACTTTG 140 consensus_9076#1 ---------------------------------TGCGATGTAGAAAATGCTCCTACTTTG 358 consensus_9076#2 ---------------------------------TGCGATGTAGAAAATGCTCCTACTTTG 277 *************************** consensus_9076#0 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 280 consensus_9076#3 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 200 consensus_9076#1 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 418 consensus_9076#2 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 337 ************************************************************ consensus_9076#0 TCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGT 340 consensus_9076#3 TCCTTTAAAGGTCAACCAACTTCAGCTGTATTCGTAACATGGACTGACTGGGACATAAGT 260 consensus_9076#1 TCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGNGACATAAGT 478 consensus_9076#2 TCCTTTAAAGGTCAACCAACTTCAGCTATA------------------------------ 367 *************************** ** consensus_9076#0 ACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAAT 400 consensus_9076#3 ACGTGTCTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAAT 320 consensus_9076#1 ACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAAT 538 consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 CGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAA 460 consensus_9076#3 CGTATCGATTTAAAGGC------------------------------------------- 337 consensus_9076#1 CGTATCGATTTAAAGGCAATATTTCAACAGCGAAGGTA---------------------- 576 consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 TGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCA 520 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 ------------------------------------------------------------ consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 CACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAA 580 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 ------------------------------------------------------------ consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 AATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTNTACAAACACA 640 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 ------------------------------------------------------------ consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 AATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGCGGGAGTATTAATTTGATAG 700 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 ------------------------------------------------------------ consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 TGAAATTTATGAACCAACATTGTACTGCAGATAAACAATCTGCTATCCGGTTTAAAAAAC 760 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 ------------------------------------------------------------ consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 CTTCCCTAGATTCAACTTGCACTTTTGGGTGAATTGAAATACCTACTGATATTTTTGTCT 820 consensus_9076#3 ------------------------------------------------------------ consensus_9076#1 ------------------------------------------------------------ consensus_9076#2 ------------------------------------------------------------ consensus_9076#0 CAAACAATTTTATAACCGTAATACTGT 847 consensus_9076#3 --------------------------- consensus_9076#1 --------------------------- consensus_9076#2 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||