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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1036 fasta sequence
[TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAACGTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGAATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCGCCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTGGATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGTGACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC-TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]
[+] EMBL CD080369 [TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAACGTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGAATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCGCCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTGGATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGTGACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGCACGCTGGGAACATCCACNTGATGGGT ]
[-] EMBL CD074285 [ CGTC TATTGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTCTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTAT ]
[-] EMBL CD074465 [ TTA TGCGACCAGATTAATAAGTTTACATAGTTGCTACTGTGAGGGTATATGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTGTCTGTGTACTGTACTTTTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTAT ]
[-] EMBL AA999312 [ ATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCAC TGATGGGTTGGGCGAGCACCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATNGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAAT ]
[-] EMBL BF936814 [ AGATCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAATTTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATTTTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAATAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]
consensusID : consensus_9095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 549 fasta sequence
[CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTANAA]
[+] EMBL CD200607 [CCTTAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTA ]
[-] EMBL BG932284 [ cggAATTAAAGTGGGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAAGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGc ]
[+] EMBL CD201397 [ GGCGTTACTCGTCCTATGTTTTTAAATGTTCACCACTAAACTTCCAAGAGGATTGTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGGGAATACCTGCGAAAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGACCCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAATCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCGGTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCTAAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAATCGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAATACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGGCCATGTTACGTANAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9095#0 TCCGAGGCCAGAATTCGGCACGAGGTCAATCGGCAACGTGTCGCCGCAGATAGTCATAAC 60
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 GTTTTAGCTCAGTCCAAGTAGGTACATGCATATGGATTTTGTCAAGGTCTGGGAAACAGA 120
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 ATATTCTCATTCAGTATCAAAACTTGAAGTCATCGTGTCAGCTATGTTTTGGTTCTAGCG 180
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 CCAGAATTTTAACTGGTTTTAAATCTGTTAGTTGAAGTTCTGACAAATCGAATTTGCTTG 240
consensus_9095#1 --------------------------------------------------------CCTT 4
* *
consensus_9095#0 GATCTGTGATCTGGACATGATTGTATACACCGTTATGATCTGTAGACAAAAGCATAAAGT 300
consensus_9095#1 AAT---TAAAGTGGGCGTTACT-CGTCCTATGTTTTTAAATGTTCACCACTAAACTTC-C 59
** * * *** * * * * * * *** * * *** ** * *
consensus_9095#0 GACAGCATTCGTCTTATTGCGACCAGATTAATAAGTTTACATAGTTGCTACT--GTGAGG 358
consensus_9095#1 AAGAGGATT-GTCTCTTTATGAACCACTGTATCAATCCATAAGATGGAAAGTCAGTAAGG 118
* ** *** **** ** ** * * ** * * * * * * * * ** ***
consensus_9095#0 GTATTTGTTGTATTCTATGTAGTACTTATTTCTTGTACGAGCTTGGCATAATATAGTG-T 417
consensus_9095#1 GAATACCTGCGA----AAATGACTTTCGAACTTCGGAAGAAACTAGCAGAGACGGATGAC 174
* ** * * * * * * * * ** * *** * **
consensus_9095#0 CTGTGTACTCTACTT---TTAATCTGTTAATTTCAACAGGCGAAACATATTATGAAGAAA 474
consensus_9095#1 CCATGGTTTCGAACCAGGCTAGTTGATTCAACTGAAGAGGCGAAACATATTATGAAGAAA 234
* ** ** * ** * ** * * ** ***********************
consensus_9095#0 TCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTTGACGCCG 534
consensus_9095#1 TCAGCAAAGTTTTCTAAAGATGATGTTATTACGGTTCCTCTCGAGGATGATTCGACGCCG 294
**************************************************** *******
consensus_9095#0 GTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCCCAGCT 594
consensus_9095#1 GTAAATGGGGTCCCAAAAGAACACCAATCTGAAAGGCGTGTTAGAATTTTCATCACAGCT 354
****************************************************** *****
consensus_9095#0 AAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAAT 654
consensus_9095#1 AAACCTGCCACCCAATCAGGCACTCATGGTACTCGACTTTGGCGTATTGAGTTCGACAAT 414
************************************************************
consensus_9095#0 CGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAAT 714
consensus_9095#1 CGCGAACGCTGGGAAAATCCACTGATGGGTTGGGCGAGCTCCGGTGACCCACTTTCAAAT 474
************************************************************
consensus_9095#0 ACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGG 774
consensus_9095#1 ACAGTTGTTGAATTTGAAACTTCTAAAGCGGCAGAAGAGTTTTGCCAACGACAGGGATGG 534
************************************************************
consensus_9095#0 CCATGTTACGTAGAAAGTCCAAATATTTTGAAAATGAATATCAAGTCCTATGGATCCAAT 834
consensus_9095#1 CCATGTTACGTANAA--------------------------------------------- 549
************ **
consensus_9095#0 TTTTCATGGAACAAACGAACACGGGTTGGATCGAAATGACGTTATCAGATTGCTCACATT 894
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 TTTCTTGTTGCTAACTTTAGCAGCTACTTCAGTTGTGACCTATTTTATTTTGCTTGCTAA 954
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 TAAATATTGTAGAAATATAAATTGAGTATAAAAAAAAAAAAAAAAAAAAAAAAAACATGC 1014
consensus_9095#1 ------------------------------------------------------------
consensus_9095#0 CATGCAGCTGCATTACCGTACT 1036
consensus_9095#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||