These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 990 fasta sequence [GGAAAACCGAATTAAATGAAAATACAAATG--AATCTTCGTG-GTGAAAA-TCGGAAG-CCAAACCACTCCTTATTCATTAACACAGGCAGAT-ATACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTATGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACGCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAACAAACAACTATCTGTGTAGAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGGAATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGGTGAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCATGTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTCTGTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAAGTTTAAAAGAATGTAAAAAAAAAAAAAAAAA] [+] EMBL CD083512 [GGAAAACCGAATTAAATGAAAATACAAATGTCAATCTTCGTG GTGAAAATTCGGAAGCCCAAACCACTCCTTATTCATTAACACAGGCAGATAATACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTG AAAGAGTCCAAATAACAGGAACCCGAGGCC ] [+] EMBL CD083950 [ G AATCGGCACGAGGGAAAA TCGGAAG TCAAACCACTCCTTATTCATTAACACAGGCAGAT ATACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTT TTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTCATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTA ] [+] EMBL CD113505 [ ACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTATGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACGCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAAC ] [+] EMBL CD113509 [ ACAGATTCTATTCCGGATACTAAAAATAAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTATGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTACGCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAAC ] [-] EMBL CD188963 [ AAGCCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCATCAGCCTAATGAAGACGGTTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGATGGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATAGTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTTCAAATA ] [-] EMBL BG930978 [ TCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCCAAATAACAGGAt ] [-] EMBL AI395147 [ AGATCTCGACAACGATG ATCAGAATCATTAGTAGCTCACTTAGCCGCATTCGCCATNCAGCTTGAATCCCAACAAACAACTATCTGTGTAGAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGGAATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGGTGAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCATGTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTCTGTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAAGTTTAAAAGAATGTAAAAAAAAAAAAAAAAA] consensusID : consensus_9109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [AAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCATCCTAATGAAGACGGAGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAGAATCCCACCTTTATGTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCC] [-] EMBL CD122983 [AAAGAGATGTTATGATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCATCCTAATGAAGACGGAGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAGAATCCCACCTTTATGTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAGTGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTTGAAAAAGAGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9109#0 GGAAAACCGAATTAAATGAAAATACAAATGAATCTTCGTGGTGAAAATCGGAAGCCAAAC 60 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 CACTCCTTATTCATTAACACAGGCAGATATACAGATTCTATTCCGGATACTAAAAATAAG 120 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 CCAAATTTAACTGGTGATATTTTATTGCCTTTGGATGAAGATTGTCCAAGAGATGTTATG 180 consensus_9109#1 ----------------------------------------------AAAGAGATGTTATG 14 ************* consensus_9109#0 ATAGTTGAAACCCCGGATGGTGAAACGCTTTATGTTCATCAT-CAGCCTAATGAAGACGG 239 consensus_9109#1 ATAGTTGAAACCCCGGATGGTGAAACGCTTNNNNTTTTTTTTTCATCCTAATGAAGACGG 74 ****************************** ** * * ** ************** consensus_9109#0 TTCTAGTGGTCTAGTCATTTTAAATGACGCAGGTGAACAGGTGAATAATCCAACTTTGAT 299 consensus_9109#1 AGGTAGTGGTCTAGTCATTTTAAATGACGCAGGGGGACAGGTGAAGAATCCCACCTTTAT 134 ****************************** * ********* ***** ** ** ** consensus_9109#0 GGCACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAG 359 consensus_9109#1 GTGACAAGTAATGGATGCCTTGGTCGCTTTGCCAGAAAATGTAATCAGTGAAACATTAAG 194 * ********************************************************* consensus_9109#0 TGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTT 419 consensus_9109#1 TGCAGACAACTCCAACGTAAATATTGAATCGGAGTTAGATACTTCACTACTTCAACGCTT 254 ************************************************************ consensus_9109#0 GAAAAAGAGTCCAAATAACAGGAACCCGAGGCCAGAATTCAACAAGACAATCGCTAACTA 479 consensus_9109#1 GAAAAAGAGTCC------------------------------------------------ 266 ************ consensus_9109#0 TGATAGGGTTTTTCAATCTAGCACTAATGGATGTCAAACAGGTCGACCACTAAGCCCTAC 539 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 GCATACTATAGATAATGAAGATGATGATGAAGATCTCGACAACGATGAATCAGAATCATT 599 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 AGTAGCTCACTTAGCCGCATTCGCCAATCAGCCTGAATCCCAACAAACAACTATCTGTGT 659 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 AGAAGGAATGGGATCTGGTGCTTCGACCCATGACCTAATAATGTGGTGCTTGTACAACGG 719 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 AATATTTATTCGTGGCTATGCAGATGAACCAACTTTTGTCATCGAATTCGTTTACCAAGG 779 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 TGAGGCATACACCCTTTCGGCGTCATATGATTCACAATCTGGTACTATCAATTTCTATCA 839 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 TGTGGAGACTAACCAGAAGTTATAAGAACATCAAAACAGAAAGTTATTTCAATTTTATTC 899 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 TGTACATACGTTTATTGCATTTTTATCAAAAACATAAAAACCTTGTTTACTTAATAATAA 959 consensus_9109#1 ------------------------------------------------------------ consensus_9109#0 GTTTAAAAGAATGTAAAAAAAAAAAAAAAAA 990 consensus_9109#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||