These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1033 fasta sequence [TANAACGAGCATATGTCTGGAGATTTTCGCAACATTCGTGGAGCCAACTAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTTGCAATCTGATAATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATCTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTC-TTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAAAGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGACGGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCCGTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCCTCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTCACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATTCTATTCTTTGTTTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC] [+] EMBL CD126105 [TANAACGAGCATATGTCTGGAGATTTTCGCAACATTCGTGGAGCCAACTAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTTGCAATCTGATAATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATCTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAA ] [+] EMBL CD170288 [ gaGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGGCATTAGGTTTTGATAAGTTTC TTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTG ] [-] EMBL CD115833 [ AAGCGATGTGGAAAAGACAGAATGCGCAGCAAGAGTTCGCCAGTGAAATCAGAATTTGAAGACATTAGGTTTTGATAAGTGTCTTTTTAAAAAACAACTTAAGTTTGTAATAAAATGTTTCGGTGCTTAAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAAAGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGACGGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCCGTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCCTCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTCACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATCCTATTCTTTGTTTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC] [-] EMBL CD154256 [ TTCGCCAGTGATATCCGAGTNTGAAGACATTAGGTTNTGATAAGTTTC TTTTAAANAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAAAGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGACGGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCCGTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCCTCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTCACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATTCTATTCTTTGTTTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC] [-] EMBL CD115762 [ acccaaAGCAAAG TACCAGCTTGTTAGAAGATTCTATTCTTTGTTTTTCATCTCGCGCTGACAATCCCCAAAACAGATCCAAAAAAGCACGGTC] consensusID : consensus_9114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CTGTATTAACCCATCGATGAAGGTTTAACAGACTCATAGGTGTGGATTATGGGATGTCACTTTAGCCAGCTTATCCACATGCATAGGAAATCGTTAGGTCCAAATGCTCACCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGCTTGCTAGATAAAATTAACTTGAAAGGTTCTTACAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGTGCAATCATATTTATGGATTTAGTACCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCCTAATAATTGTATATTAACGACTCAAACAGATTACTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTGTACTTAGTGACGACAA] [+] EMBL CD076997 [CTGTATTAACCCATCGATGAAGGTTTAACAGACTCATAGGTGTGGATTATGGGATGTCACTTTAGCCAGCTTATCCACATGCATAGGAAATCGTTAGGTCCAAATGCTCACCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGCTTGCTAGATAAAATTAACTTGAAAGGTTCTTACAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGTGCAATCATATTTATGGATTTAGTACCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCCTAATAATTGTATATTAACGACTCAAACAGATTACTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATATGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTGTACTTAGTGACGACAA] consensusID : consensus_9114#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [AGTCAAGTAGTGGGTAGTTTAAAGCAATTGATTTCAACAGACGGTCTGGAGACATAGAAACCGTAGATTTCTGGAGATTTTCGCCAACATTCGTGGAGCCAATAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTCGCAATCTGATGATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATTTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGANAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAGACAT] [+] EMBL CD194989 [AGTCAAGTAGTGGGTAGTTTAAAGCAATTGATTTCAACAGACGGTCTGGAGACATAGAAACCGTAGATTTCTGGAGATTTTCGCCAACATTCGTGGAGCCAATAATCTTATCCATCATCACTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTCGCAATCTGATGATTGCTTGCTGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAATAATGTGAACGACAATTTGCAAAAATCGAAAAGTATTTTTGACTTTATTGGCTTTAGAACATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAGACGTTTCTGANAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAGACAT] consensusID : consensus_9114#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAA] [-] EMBL CD154459 [GACTTCATCGATTAACCGCATCACGATGGCATCGTGAGAATGAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAACGGCGGAATATCTAGCTTCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGAGTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAAATGTTTCGGTGCTTGAAGACTCATTTCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 ------------------------------------------------------TANAAC 6 consensus_9114#2 AGTCAAGTAGTGGGTAGTTTAAAGCAATTGATTTCAACAGACGGTCTGGAGACATAGAAA 60 consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 GAGCATATGTCTGGAGATTTTCGCAACATTCGTGGAGCCAACTAATCTTATCCATCATCA 66 consensus_9114#2 CCGTAGATTTCTGGAGATTTTCGCCAACATTCGTGGAGCCAATAATCTTATCCATCATCA 120 consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 CTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTTGCAATCTGATAATTGCTTGC 126 consensus_9114#2 CTCTTAGTAAATGGGAGACTTGAGGGAAATAACCGTACTCGCAATCTGATGATTGCTTGC 180 consensus_9114#1 --------CTGTATTAACCCATCGATGAAGGTTTAACAGACTCATA------GGTGTGGA 46 consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 TGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAA 186 consensus_9114#2 TGAAGCCCTCAAAAACATCACTAGATAAGACGAAATCAAACTTTTCCTTCCCATTACAAA 240 consensus_9114#1 TTATG-GGATGTCACTTTAGCCAGCTTATCCACATGCATAGGAAATCGTTAGGTCCAAAT 105 consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 TAATGTGAACGACAATTT-GCAAAAATCGAAAAGTATCTTTGACTTTATTGGCTTTAGAA 245 consensus_9114#2 TAATGTGAACGACAATTT-GCAAAAATCGAAAAGTATTTTTGACTTTATTGGCTTTAGAA 299 consensus_9114#1 GCTCAC----CTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCA 161 consensus_9114#3 -----------------------------------------------------GACTTCA 7 consensus_9114#0 CATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCA 305 consensus_9114#2 CATAAGGTCGCTTTGACAGAATCCCAAACGGTACTCAGGACGTTGCGCTTTAAGACTTCA 359 ******* consensus_9114#1 TCGATTAACCGCATCACGATGGCATCGTGAGAATGCTTGCTAGATAAAATTAACTTGAAA 221 consensus_9114#3 TCGATTAACCGCATCACGATGGCATCGTGAGAATG------------------------- 42 consensus_9114#0 TCGATTAACCGCATCACGATGGCATCGTGAGAATG------------------------- 340 consensus_9114#2 TCGATTAACCGCATCACGATGGCATCGTGAGAATG------------------------- 394 *********************************** consensus_9114#1 GGTTCTTACAAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 281 consensus_9114#3 ---------AAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 93 consensus_9114#0 ---------AAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 391 consensus_9114#2 ---------AAGAATTCCAAATAAAAGCTTCCTACGATACTGCTTCTCAGATATATTGAA 445 *************************************************** consensus_9114#1 CGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAAAGTGCAATCATATTTATGGATTTAG 341 consensus_9114#3 CGGCGGAATATCTAGCTTCTGAA------------------------------------- 116 consensus_9114#0 CGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAA------------------------- 426 consensus_9114#2 CGGCGGAATATCTAGCTTCTGAAGACGTTTCTGAN------------------------- 480 *********************** consensus_9114#1 TACCTGAAAGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 401 consensus_9114#3 --------AGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 168 consensus_9114#0 --------AGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 478 consensus_9114#2 --------AGCGATGCTGAAATGACAGAATGACCAGCAAGAGTTCGCCAGTGATATCCGA 532 **************************************************** consensus_9114#1 GTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAA 461 consensus_9114#3 GTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAA 228 consensus_9114#0 GTTTGAAGACATTAGGTTTTGATAAGTTTCTTTTAAAAAACAACTTAAGTTTGTGATTAA 538 consensus_9114#2 GTTTGA-GACAT------------------------------------------------ 543 ****** ***** consensus_9114#1 ATGTTTCGGTGCCTAATAATTGTATATTAACGACTCAAACAGATTACTTGAAGACTCATT 521 consensus_9114#3 ATGTTTCGGTGC-----------------------------------TTGAAGACTCATT 253 consensus_9114#0 ATGTTTCGGTGC-----------------------------------TTGAAGACTCATT 563 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 TCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATA 581 consensus_9114#3 TCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAA---------- 303 consensus_9114#0 TCTGATATTGCTAAATATGCAGCAGCTCTATGATGAGTGGATTTCGTCAACAGGACAATA 623 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 TGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTGTACTTAGTGACGACAA------ 635 consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 TGTTGAAGCAATGTTTTAGCGAACTCGTCATCAATCTCCTTTATTCTACCAGATGCACAA 683 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 AGCACTCTTGTGCATGCTAAGTACGCCAGTTTCACAGATGAACGTTCATTTTGAGTGGAC 743 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 GGCTCTGAGGCAAAAATTTGAACACTCATGGATTCCGCTAGTTCTTTGGTTGAAGTTTCC 803 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 GTTGGAAAATCCTTGAGGAAACGTATAAGACATTGCTCATAGCTGGACCTTGTAGACTCC 863 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 TCAAATGACTTCAGACCTTTAACAAGCCTTTGCCTTGTATACGTGAAGTAAGTGGTTTTC 923 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 ------------------------------------------------------------ consensus_9114#3 ------------------------------------------------------------ consensus_9114#0 ACTTCATCCGTTTTACCACTTAGCAAAGTTACCAGCTTGTTAGAAGATTCTATTCTTTGT 983 consensus_9114#2 ------------------------------------------------------------ consensus_9114#1 -------------------------------------------------- consensus_9114#3 -------------------------------------------------- consensus_9114#0 TTTTCATCTCGCGCTGATAATCCCCAAAACAGATCCAAAAAAGCACGGTC 1033 consensus_9114#2 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||