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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1012 fasta sequence
[GGCCAGTATNTCGGCACGAGCGCTGGCCTTGAGGATGACGTTATATTCAATCATTCTGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTA-TCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA-ATTCTATTGTTCGAACTCG-GTTTATATAATAAAACATTTTTTAAGGCTT-CATTGCAAATCTA-TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACGTCAATATATAAATTCTTGGTAAATGTAATAAAAAAAAAAAAAAAA]
[+] EMBL CD081570 [GGCCAGTATNTCGGCACGAGCGCTGGCCTTGAGGATGACGTTATATTCAATCATTCTGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTA TCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTNTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAAT AAACATTNTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAA TTACCC AAGTTCAAA TCATTCAC ATG ATATTAT ATAGTCATCTT AGACGTAGAAGA ATAATTTTC ATTTACGTC ATATAT AATCCTTGG ]
[+] EMBL AF283817 [ TATATTCAATCATTCTGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTGGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTA TCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGG AAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAATAAAACATTTTTTAAGGCTT CATTGCAAATCTA GGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACGTCAATATATAAATTCTTGGTAAATGTAATAAAAAAAAAAAAAAAA]
[-] EMBL CD073863 [ TTANTCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAATAAAACATTTTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAAGTTTCAATTTACGTCAAAAAATAAATTCTTGGT ]
[-] EMBL CD076998 [ CGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCGCGTTTATATAATAAAACATTTTTTAAGGCTTCCATTGCAAATCTAGTGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACCGCAATATATAA ]
[-] EMBL CD075396 [ GCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATCTTTTCTGGACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAACATAGTTAATTATA ATTCTATTGTTCGAACTCG GTTTATATAATAAAACATTTTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCCCAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCAATTTACGTCAATATATAAATTCTTGGT ]
[-] EMBL CD073874 [ CTTCTTTGATTATTTGGAAAAAAATAAACATAGTTAATTATAGATTCTATTGTTCGAACACG GTTTATATAATATAACATTTTTTAAGGCTT CATTGCAAATCTA TGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTCAAATTCATTCTCAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCTATTTACGTCAAAATATAAATTCTTG ]
consensusID : consensus_9117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[CAANAATTTTGCACTGAGGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTNTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATC]
[+] EMBL CD079600 [CAANAATTTTGCACTGAGGCCCACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAATAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGGTGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAGAAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGATTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCATTAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGTAGATCGATTNTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGGATTATTACATC]
[-] EMBL CD155897 [ AGTTTATTCCTGAGTTCATTAAATTTCAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGGAGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGCTCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAAAGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGAAATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9117#0 GGCCAGTATNTCGGCACGAGCGCTGGCCTTGAGGATGACGTTATATTCAATCATTCTGCC 60
consensus_9117#1 --------------------------------CAANAATTTTGCACTGAG-------GCC 21
* * ** * * * ***
consensus_9117#0 CACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAA 120
consensus_9117#1 CACCTACAATGAGAAAGAAAATCTCCCGATTATTACATGGATCATTGATAAGGTTATGAA 81
************************************************************
consensus_9117#0 TAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGG 180
consensus_9117#1 TAAAAGTGGCTTTCCCTACGAACTAATAATCGTTGACGACAACAGTCCAGATGGCACAGG 141
************************************************************
consensus_9117#0 TGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAG 240
consensus_9117#1 TGAAGTTGCTAAAAAGTTACAATCTATTTTTGGAGAAAACAAAATAATTCTCAAACCCAG 201
************************************************************
consensus_9117#0 AAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGA 300
consensus_9117#1 AAGTGGAAAATTAGGACTAGGCTCAGCTTACTTGCATGGTTTGAAGTTTGCAAAAGGTGA 261
************************************************************
consensus_9117#0 TTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCAT 360
consensus_9117#1 TTTCATTATCATTATGGACGCGGATTTATCGCACCATCCAAAGTTTATTCCTGAGTTCAT 321
************************************************************
consensus_9117#0 TAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGG 420
consensus_9117#1 TAAATTACAAAAGCAACATGATTACGATGTTGTTACTGGGACGCGATATGCATCTAACGG 381
************************************************************
consensus_9117#0 AGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGC 480
consensus_9117#1 AGGTGTAAGTGGCTGGGATTTGAAGCGTAAACTTATCAGCCGTACAGCAAATTACATAGC 441
************************************************************
consensus_9117#0 TCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAA 540
consensus_9117#1 TCAAGTATTACTACGACCGAAAGCATCCGATTTAACTGGAAGTTTTAGACTATACAAAAA 501
************************************************************
consensus_9117#0 AGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGA 600
consensus_9117#1 AGCGGTTCTACAAGATTTAGTTTCACGTTGTACTTCACGTGGTTATGTTTTTCAAATGGA 561
************************************************************
consensus_9117#0 AATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGT 660
consensus_9117#1 AATGATAGTATTAGCTTCTTCACTTGGTTACAAAATTGGTGAGGTTGGAATTACATTTGT 621
************************************************************
consensus_9117#0 AGATCGATTTTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGG 720
consensus_9117#1 AGATCGATTNTATGGAGAATCAAAACTTGGTGGAACAGAAATTATTCAATATATAATGGG 681
********* **************************************************
consensus_9117#0 ATTATTACATCTTTTCTGTACTTGTTAATTTTCTTCTTTGTTTTTTTGGAAAAAAATAAA 780
consensus_9117#1 ATTATTACATC------------------------------------------------- 692
***********
consensus_9117#0 CATAGTTAATTATAATTCTATTGTTCGAACTCGGTTTATATAATAAAACATTTTTTAAGG 840
consensus_9117#1 ------------------------------------------------------------
consensus_9117#0 CTTCATTGCAAATCTATGCTAAATACTTTTGTATATAGCTAATGAATTTACCCAAAGTTC 900
consensus_9117#1 ------------------------------------------------------------
consensus_9117#0 AAATTCATTCACAATGAATATTATAATAGTCATCTTAAGACGTAGAAGATATAATTTTCA 960
consensus_9117#1 ------------------------------------------------------------
consensus_9117#0 ATTTACGTCAATATATAAATTCTTGGTAAATGTAATAAAAAAAAAAAAAAAA 1012
consensus_9117#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||