These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 997 fasta sequence [AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAAAAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC-ATATGGAT-GTGCTA-CG-TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA-GTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT-NTGGCAATAT-GGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATGTTGTTTAACTTTTCCCAAACATTATAAATAAATA] [+] EMBL CD079579 [AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAAAAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT NTGGCAATAT GGTCGGAT ] [+] EMBL BF936505 [ AACACAATAAAATCTGAAAAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAAATACGTTTCAAACATGGTTCTCACTAACCATACTACACAATATGGATGGTGCTACCGTTGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGAGGTGCGTGCATTCAAAATCTTAACGAA ] [+] EMBL CD083622 [ TGAAAAGGCCATTACAAAAACAAC TTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGG ] [+] EMBL AI976897 [ CTGACTCCACCACTCAAATTTTGGTTGTGGTATAGTGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCC ] [+] EMBL CD080532 [ CCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCTTTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGTTATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCATATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATTNNTGGC ATATGGGTC GATATGAT ] [-] EMBL CD073842 [ CCGTCAACAGCACTTACAAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCGTATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGTGCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT TTGGCAATAT GGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATGTTGTTTAACTTTTCCCAAACATTATAAATAAATA] [+] EMBL CD138622 [ CTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACAC ATATGGAT GTGCTA CG TGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGCTCTTTGGGAAGATATGGGACACAGA GTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGAGTTTTTCGTGGGCAATATT TTGGCAATAT GGTCGGATATGATG ] consensusID : consensus_9118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGTATTGTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGATATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGTTTTTCGTGGGCAATATTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCATTATAAATAAATAAAACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATGTACCGTGTTCGGTATTCACAAAGGAATATATATTTCACTTAAAGATTAT] [+] EMBL CD124991 [GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATGGATGGACAGGGTATTGTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGATATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGTTTTTCGTGGGCAATATTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTCAGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGCCTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAAAACTCCGTCAAATGTTTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGATGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCATTATAAATAAATAAAACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATGTACCGTGTTCGGTATTCACAAAGGAATATATATTTCACTTAAAGATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9118#0 AACAGGCCANAATTTTGCACGAGGATACGCTACTCTCTTTAAAACACAATAAAATCTGAA 60 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 AAGGCCATTACAAAAACAACTTTGTCTGACTCCACCACTCAAATTTTGGTTGTGGTATAG 120 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 TGCTATTAATGCCCGAAACCCACTACCATATCAGTTAACTAGGTCGGTGTTCACCAACCT 180 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 TTTAGAACTGAAAATTGACTAATATAAAGAACAGAAGCAAACGCGTAACTTTTCTTCTGT 240 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 TATATTAAATATGAATTTGCAAAGACTGTGGATTTTTAATTTATGGAGGAACGTTAACCA 300 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 TATGTCTTCTCGTTATTCACATCCACATAAACTAAACTTTATTCCGTCAACAGCACTTAC 360 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 AAAGACAAAATATTTCTTTGGATTAACTGGTAAACTACAATATCCAAACAGAACCCTTCG 420 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 TATTTCTGGTGAAAACTTATTCATAATCTGTGCGGAGTACCCCGTGTTTGAAGATTTTGT 480 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 GCAACATCTTAAGCTCCCAGATACGTTTCAAACATGGTTCTCACTAACCATACTACACAT 540 consensus_9118#1 ------------------------------------------------------------ consensus_9118#0 ATGGATGTGCTACGTGCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATG 600 consensus_9118#1 ---------------GCGTCTACGCCAAGAAGGAGAAGAAGGACATATCGTAAAAAAATG 45 ********************************************* consensus_9118#0 GATGGACAGGG------------------------------------CTCTTTGGGAAGA 624 consensus_9118#1 GATGGACAGGGTATTGTCAGTATTACCTTTAACCAGATTTTCTTAGGCTCTTTGGGAAGA 105 *********** ************* consensus_9118#0 TATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAANAGCTCTAAGCAGATAAGAGT 684 consensus_9118#1 TATGGGACACAGAGTGCGTGCATTCAAAATCTTAACGAAAAGCTCTAAGCAGATAAGGGT 165 *************************************** ***************** ** consensus_9118#0 TTTTCGTGGGCAATATTNTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTC 744 consensus_9118#1 TTTTCGTGGGCAATATTTTGGCAATATGGTCGGATATGATGAAGCTTTATTATCCTGCTC 225 ***************** ****************************************** consensus_9118#0 AGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGC 804 consensus_9118#1 AGACTCACACTTGGCTGGTGCGCTGTGGAGCAATATATGGTTCTCTTGTCCAACAACTGC 285 ************************************************************ consensus_9118#0 CTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAA 864 consensus_9118#1 CTTTCAACAAATCGAAATATTGATTAAGTATGTCAGGAAGCAGTTAGAGCACTTAGAAAA 345 ************************************************************ consensus_9118#0 AACTCCGTCAAATGTTTTTCTTGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGA 924 consensus_9118#1 AACTCCGTCAAATGTTTTTCATGAAAGCGGTGCTCCAATGTTTTTACCATTAATGCAAGA 405 ******************** *************************************** consensus_9118#0 TGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATGTTGTTTAACTTTTCCCAAACA 984 consensus_9118#1 TGAATTAGATGCTTCCCTTGCTAAACAACGTTTGAGATATTGTTTAACTTTTCCCGAGCA 465 ************************************** **************** * ** consensus_9118#0 TTATAAATAAATA----------------------------------------------- 997 consensus_9118#1 TTATAAATAAATAAAACACTTCAAAATGTTTATTATCTTTCTATGTTAATATTATTTATG 525 ************* consensus_9118#0 ------------------------------------------------- consensus_9118#1 TACCGTGTTCGGTATTCACAAAGGAATATATATTTCACTTAAAGATTAT 574 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||