cluster # 9122

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Schistosoma mansoni
cluster # 9122 cluster # 9122 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9122#0 length = 586 sequences # 1
consensus_9122#1 length = 573 sequences # 2

consensus_9122#2 length = 517 sequences # 4
consensus_9122#3 length = 415 sequences # 1

consensusID : consensus_9122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATACTAATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACTCAACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGGCGTATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAATGGCTACCCAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATTTAACAAGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATAATTAAATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTANAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAACACTGTAGTAGATCGCTAACACAGCGTATTCCTGGATAGCAT]

[+] EMBL CD153004             [AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATACTAATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACTCAACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGGCGTATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAATGGCTACCCAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATTTAACAAGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATAATTAAATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTANAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAACACTGTAGTAGATCGCTAACACAGCGTATTCCTGGATAGCAT]




>consensus_9122#0
AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATACT
AATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACTCA
ACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGGCGT
ATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAATGGCTACC
CAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATTTAACA
AGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATAATTAA
ATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTG
GAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTANAAC
AACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTT
GCAACACTGTAGTAGATCGCTAACACAGCGTATTCCTGGATAGCAT

consensusID : consensus_9122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 573
fasta sequence

                              [GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTGTTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTTGTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATGGAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCCTATTCTGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACTTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATT]

[+] EMBL CD154150             [GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTGTTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTTGTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATGGAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCCTATTCTGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACTTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATT]
[+] EMBL CD153996             [GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTGTTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTTGTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATGGAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCTTATTCTGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACTTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTANAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAGAGTTNTTCATTTCAGCTGGATCTATGCCGGA  ]




>consensus_9122#1
GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTG
TTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTT
GTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATG
GAATGGTCAACCAGGCACTAGCAGGTGCAATGCGTGGTTTACTTAAAGATTATCCTATTC
TGTTATGTCAACTTGAATACCAGTATAAAATTGGTCATTTGGGGATAGTTAAACTGCACT
TTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGTTAATAATATAA
ACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGATTCTTTAAGGTCTG
TATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTAC
CTTTTTTTAAAATTCTTCANAAATGGATATATCGGNGTGTAATTTCTGACCCATATAAAG
AGTTTTTCATTTCAGCTGGATCTATGCCGGATT

consensusID : consensus_9122#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 517
fasta sequence

                              [ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAAAATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACTTCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA]

[+] EMBL CD128749             [ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCTTTAAGGTCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCAAAAATGGATATATCGGGGTGTAATTTCTGACCTATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATC                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD133869             [                                                                                                                            CAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAAAATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACTTCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA]
[+] EMBL CD133812             [                                                                                                                            CAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAAAATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACTTCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA]
[-] EMBL CD202860             [                                                                                                                                            GGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCG                                                                                                                                                               ]




>consensus_9122#2
ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCTTTAAGGTCTGTATATGGTGTTAA
ACAATTACATGATTTAATACTTTATCTCCTGCGTTCTGCTACCGTACCTTTTTTTAAAAT
TCTTCAAAAATGGATATATCGGGGTGTAATTTCTGACCCATATAAAGAGTTTTTCATTTC
AGCTGGATCTATGCCGGATTTTTATGATCCTGATAAATCATCTCCAAATAACCTTCATTC
AGTTTCACTGCAGTTTGATCGTCTTACACAGAATTATGTGGACTGGGCATTCTTTTGGGA
GTGCCATTATTCTCTTGTATCAATAAATTTACCGAGTTTTCTTGAACCTAGTGCTTCGAA
AATTCTCAGTACGGGAAAGTATTTGAATGTTGTACAGCAATGCGCCGATCGTTATGAACT
TCCTACGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGA
TCAAGCTCATATGTATGCAAGCAGTTTATTATTGAAA

consensusID : consensus_9122#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGATTGAAAGCGGTAGCTGTTTCCTGCAAAAAAAAGTGCAGTTTAACTATCCCCAAATGACCAATTTTATACTGGTATTCAAGTTGACATAACAGAATAAGATAATCTTTAAGTAAACCACGCATTGCACCTGCTAGTGCCCGGTTGACCATTCCATGTTCGAATGTGGACTTCTCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTAAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC]

[-] EMBL CD148438             [AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGATTGAAAGCGGTAGCTGTTTCCTGCAAAAAAAAGTGCAGTTTAACTATCCCCAAATGACCAATTTTATACTGGTATTCAAGTTGACATAACAGAATAAGATAATCTTTAAGTAAACCACGCATTGCACCTGCTAGTGCCCGGTTGACCATTCCATGTTCGAATGTGGACTTCTCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTTAAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTTTGATGTAAACTCCTTGGTTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC]




>consensus_9122#3
AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGATTGAAAGCGG
TAGCTGTTTCCTGCAAAAAAAAGTGCAGTTTAACTATCCCCAAATGACCAATTTTATACT
GGTATTCAAGTTGACATAACAGAATAAGATAATCTTTAAGTAAACCACGCATTGCACCTG
CTAGTGCCCGGTTGACCATTCCATGTTCGAATGTGGACTTCTCACCTATAAATCTAGCCA
CTGTTGAATAGTCCGAACAAACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAG
TCATTTTTTCATCCACTTTAAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTT
TGATGTAAACTCCTTGGTTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9122#0      --AATACCCTGGGGTTACGTCTTCGCTCTGGACTACATACAATGGTATAAAAAAATGATA 58
consensus_9122#3      ------------------------------------------------------------
consensus_9122#1      GTGAGGAATCTTTGGCTAATATTTATAATAGCACTGGAATATTACTATACATTATTTTTG 60
consensus_9122#2      ---------------------ACCCCAAAAACTCTTGAGCTCACCATTATATGATTCT-- 37
                                                                                  

consensus_9122#0      CTAATGGGTGGCCCATCGAAAAAAATATGGATAAGAGGGCAGCTTTGATTGGTGTTAACT 118
consensus_9122#3      ------------------------------------------------------------
consensus_9122#1      TTTACGAATTATTGTGTTCATGACGTATGGAAATTTCTGAGAATCAAATTTTTTTAGTTT 120
consensus_9122#2      -TTAAGG-----TCTGTATATGGTGT-TAAACAATTACATGATTTAATACTTTATCTCCT 90
                                                                                  

consensus_9122#0      -CAACTAGAAAATAAACAGTTTAAACTGAAACTTCAATGATAGGCAACTAAAATAAAAGG 177
consensus_9122#3      -AACCCATTGGGTCCTGCGTTNNTATATTATTAACAAGGCGAGTTAACTGAT-TGAAAGC 58
consensus_9122#1      GTGATCAGTTTTATTTAAATATGTTTATGTTTGCCAAAGAGAAGTCCACATTCGAACATG 180
consensus_9122#2      GCGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCAAAAATGGAT--ATATCGGGGTGTA 148
                                         *              ***                       

consensus_9122#0      CGTATTTCGGATCTTATCTTTACTGAATCTTTAGTTGGCAACCGGTTATATCAAA--TGG 235
consensus_9122#3      GGTAGCTG----TTTCCTGCAAAAAAAAGTGCAGTT--TAACTATCC---CCAAA--TGA 107
consensus_9122#1      GAATGGTC----AACCAGGCACTAGCAGGTGCAAT---GCGTGGTTTACTTAAAGATTAT 233
consensus_9122#2      -ATTTCTG----ACCCATATAAAGAGTTTTTCATTTCAGCTGGATCTATGCCGGATTTTT 203
                            *                      *  * *                      *  

consensus_9122#0      CTACCCAAATGAGAGAGATTAAAACTAAAAATAATAGAGTGGGGTTGTCAGCAGGCAATT 295
consensus_9122#3      CCAATTTTAT-ACTGGTATTCAAGTTGACA-TAACAGAATAAGATAATC---------TT 156
consensus_9122#1      CCTATTCTGTTATGTCAACTTGAAT--ACCAGTATAAAATTGG-TCATTTGGGGATAGTT 290
consensus_9122#2      ATGATCCTGATAAATCATCTCCAAATAACCTTCATTCAGTT---TCACTGCAGTTTGATC 260
                                 *       *  *    *     *   * *    *             * 

consensus_9122#0      TAACAAGACGTGTGTTTAACACTGACCAAGATTATGTGGAATGAAAAGATAAAATCAATA 355
consensus_9122#3      TAAGTAAAC-CACGCATTGCACCTGCTAGTGCCCGGTTGACC----------ATTCCATG 205
consensus_9122#1      AAACTGCAC-TTTTTTTTGCAGGAAACAGCTACCGCTTTCAATCAGTTAACTCGCCTTGT 349
consensus_9122#2      GTCTTACAC-AGAATTATGT--GGACTGGGCATTCTTTTGGGAGTGCCATTATTCTCTTG 317
                             **                           *                       

consensus_9122#0      ATTAAATGAAAACAGAAACTCACCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACA 415
consensus_9122#3      TTCGAATGTGGAC------TTCTCACCTATAAATCTAGCCACTGTTGAATAGTCCGAACA 259
consensus_9122#1      TAATAATATAAACACAGGACAATGTTCTGGTGGTGCAGTGTTATCAGTATTATATGAT-- 407
consensus_9122#2      TATCAATAAATTTACCG---AGTTTTCTTG-AACCTAGTGCTTCGAAAATTCT-CAGT-- 370
                          ***                   **        **          **  *       

consensus_9122#0      AACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTT 475
consensus_9122#3      AACTGGAAGAATTTTATTTACAGTATCTAGTAAAGCGGGAGTCATTTTTTCATCCACTTT 319
consensus_9122#1      -TCTTTAAGG--TCTGTATATGGTGTTAAACAATTACATGATTTAATACTTTATCTCCTG 464
consensus_9122#2      -ACGGGAAAG--TATTTGAATGTTGTACAGCAATGCGCCGATC--GTTATGAACTTCCTA 425
                        *   **    * * *  *   * *  *  **        *    *  *      * * 

consensus_9122#0      ANAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTT--TGATGTAAACTCCTTGG 533
consensus_9122#3      AAAACAACGGACTGCGTAACGATTTGATAAAGGCAGAGGTT--TGATGTAAACTCCTTGG 377
consensus_9122#1      CGTTCTGCTACCGTACCTTTTTTTAAAATTCTTCANAAATGGATA-TATCGGNGTGTAAT 523
consensus_9122#2      CGTGTGAAGAACTTGTCTATAATAAAGAGCATTCAGTGTTTCTTGGTAAAACTGATCAAG 485
                                 *          *          **    *   *  *             

consensus_9122#0      TTGCCTTGCAA-CACTGTAGTAGATCGCTAACA-CAGCGTATTCCTGGATAGCAT 586
consensus_9122#3      TTGCCTTGCAAGCACTGTAGTAGATCGCTAACAACAGC----------------- 415
consensus_9122#1      TTCTGACCCATATAA-AGAGTTTTTCATTTCAGCTGGATCTATGCCGGATT---- 573
consensus_9122#2      CTCATATGTATGCAA-GCAGTTTATTATTGAAA---------------------- 517
                       *       *   *    ***   *   *