These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 901 fasta sequence [NAATGTTGCACGAGGGATCATGGAAGCTATCCGGGTTCATTTGTCGCCATTCTACTTTGTTTTATCAATAAAGAGGTTATTTCTGAATTTAAACGTGTTTATAGACGTAAACGATATCTTCAAAGTAATACAGAAAATCGGCGTCAAAGTGTTTGGTTCAATAATCAAGATGCAGCATATGAACCTGGTGAACGACAGATAGATATTAAATCTGGAATTAAATTATCAAAAAGCCCATCTTTAAGTGTAAAACAGAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAAGAAGACCATCACCCCTTTGTCGAAATAGCGCAATCACAACAG-AATAAGAATATTTAAAATCATATTACCTGCATAATCATGAACTTATAGTACAAATTTTTATAGATATTGATATTACTTGTCCTCCAGGATATTTTCCTTTTGACACTATCTAATTAAGACGAGTTCAGCTTTTCTTCTATATAAGACTGGTAGATAGAGTTTTTCAAGTGGTATAAACTTCAATTGATAAATACGAACA-GGATCTACTTCTTACGGTTCCAATACATTTCCGTGTTAAATGATGTACATTTTTTTCGGATTATTGATGTAAATGAACATGTCTTGGATAAAAAGCAAAACTCATTCAAATCAATTCTATTCTATTTGATTATAAAAGTATATATTTTGTTGAATATCTTTTCTTTTTTAACC-ACTTCACTGCTGTAC-AAAGATGATTNCTTTANANNCG-ACTG-ATG-AAAACTAGTA-TGTATTATTTTGATAT-AAAGCTT-AC-ACCAAGAC-AATATTTTT--AATGATT-ACATA-TTATGATTTCAT-GACCCATTATAA-TAAATCCGTAT-GATTAATGATCAT] [+] EMBL CD079483 [NAATGTTGCACGAGGGATCATGGAAGCTATCCGGGTTCATTTGTCGCCATTCTACTTTGTTTTATCAATAAAGAGGTTATTTCTGAATTTAAACGTGTTTATAGACGTAAACGATATCTTCAAAGTAATACAGAAAATCGGCGTCAAAGTGTTTGGTTCAATAATCAAGATGCAGCATATGAACCTGGTGAACGACAGATAGATATTAAATCTGGAATTAAATTATCAAAAAGCCCATCTTTAAGTGTAAAACAGAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAAGAAGACCATCACCCCTTTGTCGAAATAGCGCAATCACAACAG AATAAGAATATTTAAAATCATATTACCTGCATAATCATGAACTTATAGTACAAATTTTTATAGATATTGATATTACTTGTCCTCCAGGATATTTTCCTTTTGACACTATCTAATTAAGACGAGTTCAGCTTTTCTTCTATATAAGACTGGTAGATAGAGTTTTTCAAGTGGTATAAACTTCAATTGATAAATACGAACA GGATCTACTTCTTACGGTTCCAATACATTTCCGTGTTAAATGATGTACATTTTTTTCGGATTATTGATGTAAATGAACATGTCTTGGATAAAAAGCANAACTCATTCAAATCAATTCTATTCTATNTGATTATAAAAGTATATATTTTGTTGAATATCTTTTCTTTTTTAACC ACTTCACTGCTGTAC AAAGATGATTNCTTTANANNCG ACTG ATG AAAACTAGTA TGTATTATTTTGATAT AAAGCTT AC ACCAAGAC AATATTTTT AATGATT ACATA TTATGATTTCAT GACCCATTATAA TAAATCCGTAT GA ] [+] EMBL AI110967 [ AATACAGAAAATCGGCGTCAAAGTGTTTGGTTCAATAATCAAGATGCAGCATATGAACCTGGTGAACGACAGATAGATATTAAATCTGGAATTAAATTATCAAAAAGCCCATCTTTAAGTGTAAAACAGAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAANAAAACCANCACCC ] [+] EMBL AI111120 [ AATACAGAAAATCGGCGTCAAAGTGTTNGGTTCAATAATCAAGATGCAGCATATGAACCTGGTGAACGACAGATAGATNTTAAATCTGGAATTAAATTATCAAAAAGCCCATCTTTAAGTGTAAAACAGAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATNAGTTTCAAAGACCATCTGGTCTAAGAAGACCATCACCCCTTTGTCGAAATAGCGCAATCACAACAG AATAAGAATATTTAAAATCATATTACCTGCATAATCATGAACTTATAGTACAAATTTTTATAGATATTGATATTACTTGTCCTCCAGGATATTTTCCTTTTGACACTATCTAATTAAGACNAGTTCAGCTTTTCTTCTATATAAGACTGGTAGATAGAGTTTTTCAAGTGGTATAAACTTCAATTGATAAATACGAACAGGGATCTACTTCTTACGGTTCCAATACATTTCCGTGTTAAATGATGTACATTTTTTTCGGATTATGGATGTTAATGAACATGTCTGGGATAAAAAGCAAAACTCATTCAAtc ] [+] EMBL AI111094 [ AATACAGAAAATCGGCGTCAAAGTGTTNGGTTCAATAATCAAGATGCAGCATATGAACCTGGTGAACGACAGATAGATATTAAATCTGGAATTAAATTATCAAAAAGCCCATCTTTAAGTGTAAAACAGAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAAGAAGACCATCNCCCCTTTGTCGAAATAGCGCAATCACAACAGAAATAAGAATAT ] [+] EMBL AI111022 [ AATACAGAAAATCGGCGTCAAAGTGTTTGGTTCAATAATCAAGATGCAGCATATGAACCTGGTGAACGACAGATAGATATTAAATCTGGAATTAAATTATCAAAAAGCCCATCTTTAAGTGTAAAACAGAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAAGAANACCATCACCCCTTTGTCGAAATAGCGCAATCNCAA ] [+] EMBL AI111064 [ TCGGCGTCAAAGTGTTTGGTTCAATAATCAAGATGCAGCATATGANCCTGGTGAACGACAGATNGATNTTAAATCTGGAATTAAATTNTCAAAAAGCCCATCTTTAAGTGTAAAACAGAANTCTTTGGCTGACNGATTTCNCAAANTAATNNAACCNCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAAGAAGACCATCACCCCT ] [-] EMBL CD073753 [ GAAGTCTTTTGCTGACAGATTTCACAAAATAATAAAACCTCGGTCGAATGATAAGTTTCAAAGACCATCTGGTCTAAGAAGACCATCACCCCTTTGTCGAAATAGCGCAATCACAACAG AATAAGAATATTTAAAATCATATTACCTGCATAATCATGAACTTATAGTACAAATTTTTATAGATATTGATATTACTTGTCCTCCAGGATATTTTCCTTTTGACACTATCTAATTAAGACGAGTTCAGCTTTTCTTCTATATAAGACTGGTAGATAGAGTTTTTCAAGTGGTATAAACTTCAATTGATAAATACGAACA GGATCTACTTCTTACGGTTCCAATACATTTCCGTGTTAAATGATGTACATTTTTTTCGGATTATTGATGTAAATGAACATGTCTTGGATAAAAAGCAAAACTCATTCAAATCAATTCTATTCTATTTGATTATAAAAGTATATATTTTGTTGAATATCTTTTCTTTTTTAACCAACTTCACTGCTGTACAAAAGATGATTCCTTTA AAACGAACTGAATGAAAAACTAGTATTGTATTATTTTGATATAAAAGCTTAACAACAAAGACAAATATTTTTTAAATGATTAACATATTTATGATTCAATAGA ACAAGATAATTAAAT AAAATCAATTAATGATCAT] [+] EMBL CD140955 [ GTCGAAATAGCGCAATCACAACAG AATAAGAATATTTAAAATCATATTACCTGCATAATCATGAACTTATAGTACAAATTTTTATAGATATTGATATTACTTGTCCTCCAGGATATTTTCCTTTTGACACTATCTAATTAAGACGAGTTCAGCTTTTCTTCTATATAAGACTGGTAGATAGAGTTTTTCAAGTGGTATAAACTTCAATTGATAAATACGAACA GGATCTACTTCTTACGGTTCCAATACATTTCCGTGTTAAATGATGTACATTTTTTTCGGATTATTGATGTAAATGAACATGTCTTGGATAAAAAGCAAAACTCATTCAAATCAATTCTATTCTATTTGATTATAAAAGTATATATTTTGTTGAATATCTT ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||