These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 836 fasta sequence [TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATTATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAACAGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCCATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCACCCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCTGGTAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGACTCATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTTTGTTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA] [+] EMBL CD077222 [TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATTATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAACAGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCG ] [+] EMBL SMT14646 [TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATTATTATACAC TAGT AAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAACAGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATG ] [+] EMBL CD194077 [ TCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCCATCCCAGTA ] [+] EMBL CD197367 [ ATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCCATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCACCCATTCCCTTCGAA ] [+] EMBL CD190841 [ TCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCA ] [-] EMBL CD191096 [ GATGTCCAGATCCATCCCAGTAGCTGTACGTGATAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCACCCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCTGGTAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGACTCATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTTTGTTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA] consensusID : consensus_9127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CAGACTCGGCAGTATGGAGATGGCAACTTTTAAGGGAGCTGCTAGAGAGGCACAAAGAGCCGCTCTGTTGATGAAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGATTTGTAGACCGAACAAAAACCTCAGGCAGAAGAAGTTCTA] [+] EMBL CD084437 [CAGACTCGGCAGTATGGAGATGGCAACTTTTAAGGGAGCTGCTAGAGAGGCACAAAGAGCCGCTCTGTTGATGAAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGATTTGTAGACCGAACAAAAACCTCAGGCAGAAGAAGTTCTA] consensusID : consensus_9127#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [AAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAACCGAACAAAAA] [+] EMBL CD090748 [AAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAACCGAACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9127#1 ------------------------------------------------------------ consensus_9127#2 ------------------------------------------------------------ consensus_9127#0 TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATT 60 consensus_9127#1 ---------------------------CAGACTCGGCAGTATGGAGATGGCAACTTTTAA 33 consensus_9127#2 ------------------------------------------------------------ consensus_9127#0 ATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAAC 120 consensus_9127#1 GGGAGCTGCTAGAGAGGCACAAAGAGCCGCTCTGTTGATGAAACAGCGTGAAAAGGAACG 93 consensus_9127#2 ----------------------------------------AAACAGCGTGAAAAGGAACG 20 consensus_9127#0 AGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATC 180 ** * * consensus_9127#1 ACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAG-AGATGCGTGTCGGTGAAATGT 152 consensus_9127#2 ACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAG-AGATGCGTGTCGGTGAAATGT 79 consensus_9127#0 ATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAA 240 * * * * * * ***** * * * * * * * * * consensus_9127#1 CCACCAAGTTTGCTGTACATTATGATGCT--------ATTGAATATCAATTGAAAAATAA 204 consensus_9127#2 CCACCAAGTTTGCTGTACATTATGATGCT--------ATTGAATATCAATTGAAAAATAA 131 consensus_9127#0 ACAG-ACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAA 299 ** * *** * * * * * * ** *** ** * * * * ** consensus_9127#1 CACAATTG-GCCTGGTAACTTTGGATGA-AATGAAAGCACGACAGAAGGCTTATCTGACA 262 consensus_9127#2 CACAATTG-GCCTGGTAACTTTGGATGA-AATGAAAGCACGACAGAAGGCTTATCTGACA 189 consensus_9127#0 CATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAA 359 ** * * * ** * ** * * * ** * **** * * consensus_9127#1 CAAAG--AGAGAAGGAATTAGCCCTAGGAA-ACTCGAAAGGACTCGCACACAAGTCAGAA 319 consensus_9127#2 CAAAG--AGAGAAGGAATTAGCCCTAGGAA-ACTCGAAAGGACTCGCACACAAGTCAGAA 246 consensus_9127#0 TAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTT 419 *** * * ** * ** * ***** * ** ** * * * * *** consensus_9127#1 AATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTG--TTGTCTTTCGC----- 372 consensus_9127#2 AATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTG--TTGTCTTTCGC----- 299 consensus_9127#0 GAT-CTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGA 478 ** ** * ** * * * *** * * *** * *** * *** consensus_9127#1 TGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAA--TCTGAG 430 consensus_9127#2 TGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAA--TCTGAG 357 consensus_9127#0 TGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGAT 538 ** * * * *** * *** * ****** * *** * * * ** consensus_9127#1 TCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGATTTGTAGACCG 490 consensus_9127#2 TCACCCGATAAAACCGAACAAAAA------------------------------------ 381 consensus_9127#0 CCATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCC 598 ** ** * * * * consensus_9127#1 AACAAAAACCTCAGGCAGAAGAAGTTCTA------------------------------- 519 consensus_9127#2 ------------------------------------------------------------ consensus_9127#0 ACCCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCT 658 consensus_9127#1 ------------------------------------------------------------ consensus_9127#2 ------------------------------------------------------------ consensus_9127#0 GGTAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGAC 718 consensus_9127#1 ------------------------------------------------------------ consensus_9127#2 ------------------------------------------------------------ consensus_9127#0 TCATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTT 778 consensus_9127#1 ---------------------------------------------------------- consensus_9127#2 ---------------------------------------------------------- consensus_9127#0 TGTTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA 836 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||