cluster # 9127

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Schistosoma mansoni
cluster # 9127 cluster # 9127 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9127#0 length = 836 sequences # 6

consensus_9127#1 length = 519 sequences # 1
consensus_9127#2 length = 381 sequences # 1

consensusID : consensus_9127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 836
fasta sequence

                              [TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATTATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAACAGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCCATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCACCCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCTGGTAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGACTCATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTTTGTTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA]

[+] EMBL CD077222             [TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATTATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAACAGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCG                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL SMT14646             [TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATTATTATACAC TAGT   AAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAACAGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD194077             [                                                                                                                                                                TCCCAATTCTTTGCAGGATCATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCCATCCCAGTA                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD197367             [                                                                                                                                                                                               ATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAAACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCCATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCACCCATTCCCTTCGAA                                                                                                                                                                                                                              ]
[+] EMBL CD190841             [                                                                                                                                                                                                                                                                               TCTACATTTGCATCCATTCGGATACGAACATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAATAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTGATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATGTAAAAATAAATGGATGGAGTGACCCTTTTTCA                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD191096             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATGTCCAGATCCATCCCAGTAGCTGTACGTGATAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCACCCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCTGGTAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGACTCATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTTTGTTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA]




>consensus_9127#0
TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATT
ATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAAC
AGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATC
ATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAA
ACAGACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAAC
ATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAAT
AAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTTG
ATCTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGATG
TAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGATCC
ATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCCAC
CCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCTGG
TAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGACTC
ATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTTTG
TTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA

consensusID : consensus_9127#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [CAGACTCGGCAGTATGGAGATGGCAACTTTTAAGGGAGCTGCTAGAGAGGCACAAAGAGCCGCTCTGTTGATGAAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGATTTGTAGACCGAACAAAAACCTCAGGCAGAAGAAGTTCTA]

[+] EMBL CD084437             [CAGACTCGGCAGTATGGAGATGGCAACTTTTAAGGGAGCTGCTAGAGAGGCACAAAGAGCCGCTCTGTTGATGAAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGATTTGTAGACCGAACAAAAACCTCAGGCAGAAGAAGTTCTA]




>consensus_9127#1
CAGACTCGGCAGTATGGAGATGGCAACTTTTAAGGGAGCTGCTAGAGAGGCACAAAGAGC
CGCTCTGTTGATGAAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAA
ACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGC
TATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGC
ACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGG
ACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTT
GTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGA
CAAATCTGAGTCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGAT
TTGTAGACCGAACAAAAACCTCAGGCAGAAGAAGTTCTA

consensusID : consensus_9127#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [AAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAACCGAACAAAAA]

[+] EMBL CD090748             [AAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAGATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAATTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCTTATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAGTCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCTGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCACCCGATAAAACCGAACAAAAA]




>consensus_9127#2
AAACAGCGTGAAAAGGAACGACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAGAG
ATGCGTGTCGGTGAAATGTCCACCAAGTTTGCTGTACATTATGATGCTATTGAATATCAA
TTGAAAAATAACACAATTGGCCTGGTAACTTTGGATGAAATGAAAGCACGACAGAAGGCT
TATCTGACACAAAGAGAGAAGGAATTAGCCCTAGGAAACTCGAAAGGACTCGCACACAAG
TCAGAAAATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTGTTGTCTTTCGCT
GAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAATCTGAGTCA
CCCGATAAAACCGAACAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9127#1      ------------------------------------------------------------
consensus_9127#2      ------------------------------------------------------------
consensus_9127#0      TGATTTTATGTTATTTTGATTCTATACAACAAATAAGAGGTGTAAATAATAGGCTAAATT 60
                                                                                  

consensus_9127#1      ---------------------------CAGACTCGGCAGTATGGAGATGGCAACTTTTAA 33
consensus_9127#2      ------------------------------------------------------------
consensus_9127#0      ATTATACACTTAGTCAAAAGTTTGAAATAAAACAAAAAATAAGTAAATAATTCATTTAAC 120
                                                                                  

consensus_9127#1      GGGAGCTGCTAGAGAGGCACAAAGAGCCGCTCTGTTGATGAAACAGCGTGAAAAGGAACG 93
consensus_9127#2      ----------------------------------------AAACAGCGTGAAAAGGAACG 20
consensus_9127#0      AGTAATCTTTGCAGACATCTTATCTGATACGGTGTAATGATCCCAATTCTTTGCAGGATC 180
                                                                 **          * *  

consensus_9127#1      ACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAG-AGATGCGTGTCGGTGAAATGT 152
consensus_9127#2      ACAAGAACTAGAACTTCAGAAAAGGAAACTCGAGGCAG-AGATGCGTGTCGGTGAAATGT 79
consensus_9127#0      ATATGGTTCCCATCGACTAGCGGGGAAAATATGTTTATTACGTTCATACCAGCTACGCAA 240
                      * * *      * *  *      ***** *      *  *  * * *  * *  *     

consensus_9127#1      CCACCAAGTTTGCTGTACATTATGATGCT--------ATTGAATATCAATTGAAAAATAA 204
consensus_9127#2      CCACCAAGTTTGCTGTACATTATGATGCT--------ATTGAATATCAATTGAAAAATAA 131
consensus_9127#0      ACAG-ACTTTTCCAGCATGTGACTCTTCTTTTTCTACATTTGCATCCATTCGGATACGAA 299
                       **  *  *** * * *  * *   * **        ***      ** * * * *  **

consensus_9127#1      CACAATTG-GCCTGGTAACTTTGGATGA-AATGAAAGCACGACAGAAGGCTTATCTGACA 262
consensus_9127#2      CACAATTG-GCCTGGTAACTTTGGATGA-AATGAAAGCACGACAGAAGGCTTATCTGACA 189
consensus_9127#0      CATCGTCGTGAACATCAAAGCAGAATAATGGTCCAGATTTACCACGGGCCTTAGTTACAA 359
                      **   * * *      **    * ** *   *  *       **   * ****  *   *

consensus_9127#1      CAAAG--AGAGAAGGAATTAGCCCTAGGAA-ACTCGAAAGGACTCGCACACAAGTCAGAA 319
consensus_9127#2      CAAAG--AGAGAAGGAATTAGCCCTAGGAA-ACTCGAAAGGACTCGCACACAAGTCAGAA 246
consensus_9127#0      TAAAATCATAAAATGTATAATGATGAGGAATAATCAAATCTTCCTTGATATACATCATTT 419
                       ***   * * ** * ** *     ***** * ** **    *    * * *  ***   

consensus_9127#1      AATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTG--TTGTCTTTCGC----- 372
consensus_9127#2      AATTCTACTCTAGAAAAAAAGAATAAACTTCAGCCTTCTTTG--TTGTCTTTCGC----- 299
consensus_9127#0      GAT-CTGCACTGGCAGACTTTAATTCAGAGAAATCTTTACGGAGTTGCTCTACGCAACGA 478
                       ** ** * ** * * *    ***  *    *  ***    *  ***   * ***     

consensus_9127#1      TGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAA--TCTGAG 430
consensus_9127#2      TGAAGAGGAAGATGTCGAGGATGAACTAAAGTCATCCACCGCTGTAGACAAA--TCTGAG 357
consensus_9127#0      TGTAAAAATAAATGGATGGAGTGACCCTTTTTCATCCGCACTTGTTTGCGATGTCCAGAT 538
                      ** * *   * ***    *  *** *     ****** *   ***   * *    * ** 

consensus_9127#1      TCACCCGATAAAGTAAAAGTTGTACTACATTTTAGATCCCTCAAGATGATTTGTAGACCG 490
consensus_9127#2      TCACCCGATAAAACCGAACAAAAA------------------------------------ 381
consensus_9127#0      CCATCCCAGTAGCTGTACGTGGTAACTATTTCCTCTTCTTTGATTGCAGCTTGTTTTGCC 598
                       ** ** *  *     *      *                                    

consensus_9127#1      AACAAAAACCTCAGGCAGAAGAAGTTCTA------------------------------- 519
consensus_9127#2      ------------------------------------------------------------
consensus_9127#0      ACCCATTCCCTTCGAAGTCCTTCCCTTAGACGTTTTTCTTCTTCATCTCTGTCAATATCT 658
                                                                                  

consensus_9127#1      ------------------------------------------------------------
consensus_9127#2      ------------------------------------------------------------
consensus_9127#0      GGTAGAAAACTGGTGTCAACAGTTGGATTTTTTCCCAAGCGTCTTCGTTTAGTAGAAGAC 718
                                                                                  

consensus_9127#1      ------------------------------------------------------------
consensus_9127#2      ------------------------------------------------------------
consensus_9127#0      TCATTGTCAGACTTAACGGTACCTTCCCCATCAGTTAGAACTTCTTCCGGCTGAGGTTTT 778
                                                                                  

consensus_9127#1      ----------------------------------------------------------
consensus_9127#2      ----------------------------------------------------------
consensus_9127#0      TGTTCGGTTTCATCGGGTGACTCAGATTTGTCTACAGCGGGTGGAAACCTTCTTTCTA 836