These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 764 fasta sequence [ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTCTACGCCGGGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTCGGTTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCACAAGGAGGCTCCCACTGTTTGTATGCATGCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACTTTTCGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCCGGACTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCGCTCGCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA] [+] EMBL CD086482 [ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTCTACGCCGGGCGACTGA ] [+] EMBL CD086526 [ GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAACCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAAC ] [+] EMBL CD086489 [ GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGGTCTACGCCGTGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTCGGTTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTAT ] [+] EMBL CD086481 [ GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCG ] [+] EMBL CD086477 [ GGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGACCTCCAGTACCTGTT ] [+] EMBL CD086528 [ GGACGTTANCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTGCTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGTGTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACCAGCTATCTCCAGATTTGTTTAACCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGT ] [+] EMBL CD089248 [ CCCTTATCAGACTCGCTTTCGCTACGCCTCCCCTATTCGGTTAAGCTCGCAACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCACAAGGAGGCTCCCACTGTTTGTATGCATGCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACTTTTCGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCCGGACTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCGCTCGCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA] consensusID : consensus_9130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [CGAACCGCCATACTGGATTTCACTTAAATGACCCCGCGCCATATTGGAGTGGGGCCAAAAGATTAAGATAATTAAGCTATGAGCAAAGTCTCATTTCGAGCTCGACAAATAGATTTTAACAAACCCTTACCTATTCTGAAGCATGGTTCTGAATTGTTCCTTGAAATCAGTGAAAATGCACTGGTCAATCGTGGTGTTCCACAGATTCCCAGCGGGATGGAGAAAGAGGAGGAAAATGTAATAAAATTTAGCCCTTTTATGTAGTAATACGATGTATGTTATTGTCCTTGTGTCTCTAATTTTGGGTTGTTTACTTGGTTATTAGGAGAAGTGGTTCGTGAACTAATGTCGTTTTTTAACTTTCCCCACCAGGAACATCACTTTCTGGAGGTTATTCAGGCCCTGCAACTCCGTACTGACTCAGATGTTAAAATACCTGTTCCTGAGATAATTGACAAAGAGAATGATTATAA] [+] EMBL CD188679 [CGAACCGCCATACTGGATTTCACTTAAATGACCCCGCGCCATATTGGAGTGGGGCCAAAAGATTAAGATAATTAAGCTATGAGCAAAGTCTCATTTCGAGCTCGACAAATAGATTTTAACAAACCCTTACCTATTCTGAAGCATGGTTCTGAATTGTTCCTTGAAATCAGTGAAAATGCACTGGTCAATCGTGGTGTTCCACAGATTCCCAGCGGGATGGAGAAAGAGGAGGAAAATGTAATAAAATTTAGCCCTTTTATGTAGTAATACGATGTATGTTATTGTCCTTGTGTCTCTAATTTTGGGTTGTTTACTTGGTTATTAGGAGAAGTGGTTCGTGAACTAATGTCGTTTTTTAACTTTCCCCACCAGGAACATCACTTTCTGGAGGTTATTCAGGCCCTGCAACTCCGTACTGACTCAGATGTTAAAATACCTGTTCCTGAGATAATTGACAAAGAGAATGATTATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9130#0 ACCGGACGTTAGCACCCGATGTCTGTCTGCCGTATATCACTTTGCGGTATTCGGAGTTTG 60 consensus_9130#1 --------------------------------CGAACCGCCATACTGGATTTCACTTAAA 28 * * * * * * *** * consensus_9130#0 CTATCGCGAGGTAGATCGCAATGACCCCCTCAACGATTACAGTGCTCTACCCCCGCAAGT 120 consensus_9130#1 TGACCCCGCGCCATATTGGAGTGGGGCCA--AAAGATTAAGATAATTAAGCTATGAGCAA 86 * * ** * * ** * * ** ** ** ***** * * * * * consensus_9130#0 GTCCGTACGACGCACTACCTAAATAGTTTTCGGGGAGAACC-AGCTATCTCCAGATTTGT 179 consensus_9130#1 AGTCTCATTTCGAGCTCGACAAATAGATTTTAACAAACCCTTACCTATTCTGAAGCATGG 146 * * ** ** ****** *** * * * **** * ** consensus_9130#0 TTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTTCAACGTTAGTGGGTT-CGG 238 consensus_9130#1 TTCTGAATTGTTCCTTGAAATCAGTGAAAATGC--ACTGGTCAATCGTGGTGTTCCACAG 204 ** ** ** * *** * * *** **** * *** * * consensus_9130#0 ACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGATCATCTGGTTTCGGG 298 consensus_9130#1 ATTCCCAG---------CGGGA--TGGAGAAAGAGGAGGAAAATGTAATAAAATTTAGCC 253 * **** *** * * * * * * * * * ** *** * consensus_9130#0 TCTACGCCGGGCGACTGATTCGCCCTTATCAGACTCGCTNTCGCTACGACTCCCCTATTC 358 consensus_9130#1 CTTTTATGTAGTAATACGATGTATGTTATTGTCCTTG-TGTCTCTAATTTTGGGTTGTTT 312 * * * * **** ** * * ** *** * * ** consensus_9130#0 GGTTAAGCTCGCCACACAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 418 consensus_9130#1 ACTTGG--TTATTAGGAGAAGTGGTTCGTGAACTAATGTCGT-----TTTTTAACTTTCC 365 ** * * * ** *** ** ** * * * ** consensus_9130#0 CCACAAGGAGGCTCCCACTGTTTGTATGC-ATGCGGTTTCAGGTTCTATTTCACTCCCCT 477 consensus_9130#1 CCACCAGGAACATC--ACTTTCTGGAGGTTATTCAGGCCCTG---CAACTCCGTACTGAC 420 **** **** ** *** * ** * * ** * * * * * * * * * consensus_9130#0 CCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTA 537 consensus_9130#1 TCAGATGTTAAAAT-ACCTGTTCCTGA-GATAATTGACAA--AGAGAATGATTATAA--- 473 * * *** * *** * *** * * ** * * * * * *** * * consensus_9130#0 TTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAAGGTTTCACGTGCCCCGCCCTACT 597 consensus_9130#1 ------------------------------------------------------------ consensus_9130#0 TTTCGCTAACTTAGTACCACGGATCTGTTTTCGAATACGGGGCTATCACCCACTACGGCC 657 consensus_9130#1 ------------------------------------------------------------ consensus_9130#0 GGACTTTCCATTCCGTTCTTCTAACAGTTCCGCTATCACTAGCAGGCTCTTCCCCGTTCG 717 consensus_9130#1 ------------------------------------------------------------ consensus_9130#0 CTCGCCACTACTTGGGGAATCTCGGCTGATTTCTTTTCCTCCGGCTA 764 consensus_9130#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||