These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1469 fasta sequence [GCCATATTCGGCCGAGGTTTGAACTTGTTTATGTCTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGTTATTGGCCTTATAATAACCTTAACACTATTATTTACCATAAATATTAACTCTGATATTTCTAATTCACATGGGGAATATACTAATTGGGAATTATTTGTAACAATTGGAATTTGTTCATCTGTTCAATTATACTGCGAGTTCTACAAAAATCCTGTTAAATGGCATCAAATTCGTGGCAGTATAATGATAATTATTATGAAATGTATATCTTTTTCTATGGAAAATAAAAATTTTTATAAAACGGTCAATAAAGAGCCTTGCTGCATACTACTGTGGACACCATTATATCGTGGATTACTTTGGTTATCCTATTGTCTATGTCCAGCTAGTTTATTGTTTGGCCCATGGTTTAATCCATTAAGATATGAAGAAATGGTTAGAAACTATGCTGTTAATGATAGACCTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTGTCTTTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAAATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAATACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTT-CCTCGGTCGTTAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGTCTTTC-GGGAAAAATTGGGCCAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGAATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATT-GGTGTAATGTAGCCTT-CAGTTGTTTGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATACAAGTGAACAACAATTTCAGGGCTATAATATGTGGCATAC-TATGAATAAATGGTCCAATCTGGGATTTCTC-AGTCATATTGGAG-CCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATCAGCCTAATGTATTTTTACTGTACGGAATAAAACATTC] [+] EMBL CD081600 [GCCATATTCGGCCGAGGTTTGAACTTGTTTATGTCTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGTTATTGGCCTTATAATAACCTTAACACTATTATTTACCATAAATATTAACTCTGATATTTCTAATTCACATGGGGAATATACTAATTGGGAATTATTTGTAACAATTGGAATTTGTTCATCTGTTCAATTATACTGCGAGTTCTACAAAAATCCTGTTAAATGGCATCAAATTCGTGGCAGTATAATGATAATTATTATGAAATGTATATCTTTTTCTATGGAAAATAAAAATTTTTATAAAACGGTCAATAAAGAGCCTTGCTGCATACTACTGTGGACACCATTATATCGTGGATTACTTTGGTTATCCTATTGTCTATGTCCAGCTAGTTTATTGTTTGGCCCATGGTTTAATCCATTAAGATATGAAGAAATGGTTAGAAACTATGCTGTTAATGATAGACCTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTGTCTTTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAAATTGCAACCTTGGCTTCATGCTTATTTCGCATCACANAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTA ] [+] EMBL CD083597 [ AGAAACTATGCTGTTAATGATAGA CTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTGTC TTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAAATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAATACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTT CCTCGGTCGTTAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAA ] [+] EMBL CD082163 [ gGAC TGTTT ACTGAT CATTAGCTTCGATATTGATATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTTCATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAATACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTTCCCTCGGCCG TAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGTCTTTCGGGGAAAAATTGGGCCAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGAATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATTGGGTGT ATGTAGCCTTNCAGTTG TTGGCTATATTTCATTTGGCTTATTTAGCTGGAATGTTTGATACAAGTGAACAACAATTTCAGGCCTTTAATATGTGGCCTACTTATG ATAAAAGGTCCATCCTGGAATTTCTCTAGCCA ATTGGAA CCTTTGCAAATTTCTTATTTTACTTAAATTTAAAAAAAAAATTTGGA CACCCATAGGT TTTTTCCTGGCCGGGA AAAACATT ] [-] EMBL CD139807 [ AAACAAGAAAATTCTAAAGAGAAAAACAGATCAAAAGATGTATATAAACCTGTTGTGGTAACTCGTCCATTGTTTATTGAATTT CCTCGGTCGTTAGTTGAAGTTGTTATATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTT ] [-] EMBL CD075779 [ GAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCCATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTTGAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGTCTTTC GGGAAAAATTGGCCAAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGAATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATT GGTGTAATGTAGCCTT CAGTTGTTTGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATACAAGTGAACAACAATTTCAGGGCTATAATATGTGGCATAC TATGAATAAATGGTACAATCTGGGATTTCTC AGTCATATTGTAG CCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATCAGCTTAATGTATTTTTACTGTACGGAATAAAACATTC] [-] EMBL CD075423 [ TCATAGTACCAAAAATTCTTCGTGGGTATATT GGTGTAATGAACCCTT CAGTTGTTGGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATCCAAGTGACCACCAATTTCAGGGCTATAATATGGGGCATAC TATGAATAAATGGTCCAATTTGGGATTTCCC AGTCATATT GAGCCCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATCAGCATAATGTATTTTTACTGTACGGAATAAACCACTC] consensusID : consensus_9133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence [TTTACTCTTGTGATTTGTTGCATGATTAACAAATTCGTCGAAGATCGACAGATTCTCATATCCCTGATTTTTAGTTGTGAGTGTTGAATAATCCAAGGGATTTTTGTCCAAGTTTTATTTCATTAGTTCGAAAAAGATGGATGAACAAGAAGAATCTTGGTCTATGGATGAAGATGAAGAAGAACTATTTGAGGAGGTGGACGAAGAAAATGGAGATAGTGATCTGTCGGGAAATTATTTAGATGATCTAGAAACTGTTGAAGAGGATGATGATGATTTTGAAGATGTTTCATTCGAGAATGCATTATCCATGAAGTCTATATCATCAGAAATATTATCATGCTCCATACCAGTTTTGAAACAAGCCTACTGGTTACTGATTTTGATACTTGTTTCATGTCTTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGGTATTGCCTTATATAACCTTACACTATTATTTACCATAATATTAACTCTGATATTTCTAATT] [+] EMBL BF936793 [TTTACTCTTGTGATTTGTTGCATGATTAACAAATTCGTCGAAGATCGACAGATTCTCATATCCCTGATTTTTAGTTGTGAGTGTTGAATAATCCAAGGGATTTTTGTCCAAGTTTTATTTCATTAGTTCGAAAAAGATGGATGAACAAGAAGAATCTTGGTCTATGGATGAAGATGAAGAAGAACTATTTGAGGAGGTGGACGAAGAAAATGGAGATAGTGATCTGTCGGGAAATTATTTAGATGATCTAGAAACTGTTGAAGAGGATGATGATGATTTTGAAGATGTTTCATTCGAGAATGCATTATCCATGAAGTCTATATCATCAGAAATATTATCATGCTCCATACCAGTTTTGAAACAAGCCTACTGGTTACTGATTTTGATACTTGTTTCATGTCTTTATATGGCGTGTTGTGCAATTTTTACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCTCCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTGGTGGATTGGTATTGCCTTATATAACCTTACACTATTATTTACCATAATATTAACTCTGATATTTCTAATT] [+] EMBL CD078189 [ aggAAATTCGTCGAAGATCGACAGATTCTCATATCCCTGATTTTTAGTTGTGAGTGTTGAATAATCCAAGGGATTTTTGTCCAAGTTTTATTTCATTAGTTCGAAAAAGATGGATGAACAAGAAGAATCTTGGTATATGGATGAAGATGAAGAAG ACTATTTGAGGAGGTGGACGAAG AAATGGAGATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9133#0 GCCATATTCGGCCGAGGTTTGAACTTGTTTATGTCTTATATGGCGTGTTGTGCAATTTTT 60 consensus_9133#1 ---------------------------------------------------------TTT 3 *** consensus_9133#0 ACTGAACAGATGTTTCCCTTCAAATGGGAAAATTAGCCGCACATTTGTCGCAATAATCCT 120 consensus_9133#1 ACTCTTGTGATTTGTTGCAT--GATTAACAAATTCGTCGAAGATCGACAG-----ATTCT 56 *** *** * * * * ** ***** * ** * ** * ** ** consensus_9133#0 CCATATATTTTCTATTTGTCTTGGTTTGTTAGTTCTATATTATGCTTCATATGACCTGTG 180 consensus_9133#1 C---ATATCCCTGATTT---TTAGTT-GTGAGTGTTGAATAA---TCCAAGGGATTTTTG 106 * **** **** ** *** ** *** * ** * * ** ** * ** consensus_9133#0 GTGGATTGTTATTGGCCTTATAATAACCTTAACACTATTATTTACCATAAATATTAACTC 240 consensus_9133#1 TCCAAGTTTTATT----TCAT--TAGTTCGAAAAAGATGGATGAACAAGAAGA---ATCT 157 * * ***** * ** ** ** * ** * * ** ** * * consensus_9133#0 TGATATTTCTAATTCACATGGGGAATATACTAATTG-GGAATTATTTGTAACAATTGGAA 299 consensus_9133#1 TGGT-CTATGGATGAAGATGAAGAAGA-ACTATTTGAGGAGGTGGACGAAGAAAATGGAG 215 ** * * ** * *** *** * **** *** *** * * * ** **** consensus_9133#0 TTTGTTCATCTGTTCAATTATACTGCGAGTTCTACAAAAATCCTGTTAAATGGCATCAAA 359 consensus_9133#1 ATAGTG-ATCTGTCGGGAAATTATTTAGATGATCTAGAAA--CTGTTGAAGAGGATGATG 272 * ** ****** ** * * * * *** ***** ** * ** * consensus_9133#0 TTCGTGGCAGTATAATGATAATT-ATTATGAAATGTATATCTTTTTCTATGGAAAATAAA 418 consensus_9133#1 ATGAT-----TTTGAAGATGTTTCATTCGAGAATGCAT-----TATCCATG--AAGTCTA 320 * * * * * *** ** *** **** ** * ** *** ** * * consensus_9133#0 AATTTTTATAAAACGGTCAATAAAGAGCCTTGCTGCATACTACTGTGGACACCATTATAT 478 consensus_9133#1 TATCATCAGAAA-----TATTA-----TCATGCTCCATACCAGTTTTGAAACAAGCCTAC 370 ** * * *** * ** * **** ***** * * * ** ** * ** consensus_9133#0 CGTGGATTACTTTGGTTATCCTATT---GTCTATGTCCAGCTAGTT---TATTGTTTGGC 532 consensus_9133#1 TGGTTACTGATTTTGATACTTGTTTCATGTCTTTATATGGCGTGTTGTGCAATTTTTACT 430 * * * *** * ** ** **** * * ** *** * * *** consensus_9133#0 CCATGGTTTAATCCATTAAGATATGAAGAAATGGTTAGAAACTATGCTGTTAATGATAGA 592 consensus_9133#1 GAACAGATGTTTCCCTTCAAATG-GGAAAATTAGCCGCACATT-TGTCGC-AATAATCCT 487 * * * *** ** * ** * * ** * * * * * ** * *** ** consensus_9133#0 CCTTTTTCTTTCAAAAATACTATGATTTCACTTTTTCAGACAGCTAAATTATTTGGGCTG 652 consensus_9133#1 CCATATATTTTCTATT-TGTCTTGGTTTGTTAGTTCTATATTA-TGCTTCATATGACCTG 545 ** * * **** * * ** *** ** * * * * ** ** *** consensus_9133#0 TCTTTTTTTATATTTAACTTATTCGACTTGTTTCACTGATACATTAGCTTCGATATTGAA 712 consensus_9133#1 TGGTGGATTGGTATTGCCTTATATAACC--TTACACTATTA--TTTACCATAATATTAAC 601 * * ** ** ***** ** ** **** ** ** * ***** * consensus_9133#0 ATTGCAACCTTGGCTTCATGCTTATTTCGCATCACAAAGTTTTCGTTTCAGTCATTATTT 772 consensus_9133#1 TCTGATATTTCTAATT-------------------------------------------- 617 ** * * ** consensus_9133#0 CATATGTATATCAAGTGAATCTTCCATGACAGCCTTAGGATATTGTGATAAATATTCAAT 832 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 ACAATCAAACAAACAAGAAAATACTAAAGAGAAAAACAGATCAAAAGATGTATATAAACC 892 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 TGTTGTGGTAACTCGTCCATTGTTTATTGAATTTCCTCGGTCGTTAGTTGAAGTTGTTAT 952 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 ATACTGGAATTTGCCAATGCATACATGGTTAAAACAATATGTATACAAGCCGTTACGTCC 1012 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 ATATGGACATGTGTATGCTGTATTGGGAACGTATACAGCTAGTTCATTGTTGCATGGTTT 1072 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 GAATTTTCAACTTAGCGCTGTTTTATTCTCTATTGGAATCTATGCATATACTGAATATGT 1132 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 CTTTCGGGAAAAATTGGGCCAGATCCTAGATGCATGTATTGCTAGTCGTCCATGTCCTGA 1192 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 ATCCTGTTGTCATAGTAACAAGAATTCATCGTGGGTATATTGGTGTAATGTAGCCTTCAG 1252 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 TTGTTTGGCTATATTTCATTTGGCTTATTTAGCTGTAATGTTTGATACAAGTGAACAACA 1312 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 ATTTCAGGGCTATAATATGTGGCATACTATGAATAAATGGTCCAATCTGGGATTTCTCAG 1372 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 TCATATTGGAGCCTTTGCAAATTTCTTATTTTACTTATATTTATAAATAAATATTGAATC 1432 consensus_9133#1 ------------------------------------------------------------ consensus_9133#0 AGCCTAATGTATTTTTACTGTACGGAATAAAACATTC 1469 consensus_9133#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||