These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1476 fasta sequence [TCATCATTTTTAGAAGTACAACTCAATCTAGACTATCGACGAAAATGGGATGATAAGATTGTAGAATTGCATTGTATTACACCGAATAACGATACACATATTAAAGATTTAGATATTATTCGTTGGGTTGTACGTTTTCCATTTCCTATGGTCGATCGAGAATATGTTTACGTACGACGTTGGTGGATTCAACCTACTGAATTTTCCTTGAATACGGAGAAATCACTTGCATCTCATAAAGATAATTCTTCAGAATCGATTCCTTTATCTCAAGACAATACAACTAAGAACATTTCTACTAGACGCTATGCCTATCTAATTTCTCGATGCTCAGCAGATTTCAAAGAAAAATGTACCCAATCTTCTGATATTTCTTCTGTAAAGTCTTCGTGGGAAAACATAAAGAAACGGGGTCTTGTTCAAGTTCATGAATATCATTCTGAAATGTTAATTGAGTCACATGGAGAATTCAACCAAAATGGACTGAATTACTATTTAATTTATTATGATGATCCCTGTCTTCCGATTAATGGATCGCCAATAAAATTATTTTCTGTCAGAGCTATTGAAGAATTTATGACAAAACTTCATAAAGCTGCATTGCAATTATGCCATGTAGGCCTACCTATTGGTATTCGCCCCATAATATATGATAATAATAGTAATACTACTACTAATAATAACACCAATACTACTGATAGCGAAATAAAACTTGACCCANATCCAGATCT-ATTCAATGCATCAAAGTTAATATCACCATCATCATCATCATCATCATCATCAACATCACCTACAACGAAGAAACAATTTAGTGGTATAAAACTCA-ATTCTTATTTCTTCACTGATCGTCATCCTTCAGAATTGAATAACAATTACATTGATTCAACTGCAGCCGCCTTATCCTAGTAATAGCACCTCCTTTCTTTTGTTTATTTTTTTGCTCTGTTTAACTGTAGACTCTTCTC-TTTTTTTCTAGTGAAAGAAATAT-GTTTACTTCACTATTCCTTCCTG-TTTTTTTTCAAGTATTTATGAATAAGACAGATG-GTTGGTATGTTTATTACTACTGCTGCCACCACCACTAAGGAGAGTACCTTTTCATGCTCTCAATAAAAAGAACTTTCGCTTTATTTTTAAACATACATACTGATTATACACTTTGAAATGTGACTTTGATGAAAAACATTTGTAATCTTGTGATTGAAGCATATTTGGGATAGTCCCTATGTAGTGTTTGTTTTGTCATTTAGATCTACTCACATTATGTCTACTCAATTGTATCTAGACACAGAAATAGTTAGATGAATATATGTATACATTGATATATATATATATATATATCAATGTATATATGTAGAGAGCTAACATCAATGTATTCACTTTTCATGTTGCTTTTCTTTGTATATGCATATTCTGTATATTATTTATTTATATAAAAATGTAAGTACAATTGTGTATAGTGATTAATATAAGAAGTTA] [-] EMBL CD181781 [TCATCATTTTTAGAAGTACAACTCAATCTAGACTATCGACGAAAATGGGATGATAAGATTGTAGAATTGCATTGTATTACACCGAATAACGATACACATATTAAAGATTTAGATATTATTCGTTGGGTTGTACGTTTTCCATTTCCTATGGTCGATCGAGAATATGTTTACGTACGACGTTGGTGGATTCAACCTACTGAATTTTCCTTGAATACGGAGAAATCACTTGCATCTCATAAAGATAATTCTTCAGAATCGATTCCTTTATCTCAAGACAATACAACTAAGAACATTTCTACTAGACGCTATGCCTATCTAATT ] [+] EMBL CD080094 [ GTTGTACGTTTTCCATTTCCTATGGTCGATCGAGAATATGTTTACGTACGACGTTGGTGGATTCAACCTACTGAATTTTCCTTGAATACGGAGAAATCACTTGCATCTCATAAAGATAATTCTTCAGAATCGATTCCTTTATCTCAAGACAATACAACTAAGAACATTTCTACTAGACGCTATGCCTATCTAATTTCTCGATGCTCAGCAGATTTCAAAGAAAAATGTACCCAATCTTCTGATATTTCTTCTGTAAAGTCTTCGTGGGAAAACATAAAGAAACGGGGTCTTGTTCAAGTTCATGAATATCATTCTGAAATGTTAATTGAGTCACATGGAGAATTCAACCAAAATGGACTGAATTACTATTTAATTTATTATGATGATCCCTGTCTTCCGATTAATGGATCGCCAATAAAATTATTTTCTGTCAGAGCTATTGAAGAATTTATGACAAAACTTCATAAAGCTGCATTGCAATTATGCCATGTAGGCCTACCTATTGGTATTCGCCCCATAATATATGATAATAATAGTAATACTACTACTAATAATAACACCAATACTACTGATAGCGAAATAAAACTTGACCCANATCCAGATCT ATTCAATGCATCAAAGTTAATATCACCATCATCATCATCATCATCATCATCAACATCACCTACAACGAAGAAACAATTTAGTGGTAAAAAACTCA ATTCTTATTTCTTCACTGATCG ] [+] EMBL CD079444 [ GTTGTACGTTTTCCATTTCCTATGGTCGATCGAGAATATGTTTACGTACGACGTTGGTGGATTCAACCTACTGAATTTTCCTTGAATACGGAGAAATCACTTGCATCTCATAAAGATAATTCTTCAGAATCGATTCCTTTATCTCAAGACAATACAACTAAGAACATTTCTACTAGACGCTATGCCTATCTAATTTCTCGATGCTCAGCAGATTTCAAAGAAAAATGTACCCAATCTTCTGATATTTCTTCTGTAAAGTCTTCGTGGGAAAACATAAAGAAACGGGGTCTTGTTCAAGTTCATGAATATCATTCTGAAATGTTAATTGAGTCACATGGAGAATTCAACCAAAATGGACTGAATTACTATTTAATTTATTATGATGATCCCTGTCTTCCGATTAATGGATCGCCAATAAAATTATTTTCTGTCAGAGCTATTGAAGAATTTATGACAAAACTTCATAAAGCTGCATTGCAATTATGCCATGTAGGCCTACCTATTGGTATTCGCCCCATAATATATGATAATAATAGTAATACTACTACTAATAATAACACCAATACTACTGATAGCGAAATAAAACTTGACCCANATCCAGATCT ATTCAATGCATCANAGTTAATATCACCATCATCATCATCATCATCATCATCAACATCACCTANCACGAA ] [+] EMBL CD111365 [ TTTCCTTGAATACGGAGAAATCACTTGCATCTCATAAAGATAATTCTTCAGAATCGATTCCTTTATCTCAAGACAATACAACTAAGAACATTTCTACTAGACGCTATGCCTATCTAATTTCTCGATGCTCAGCAGATTTCAAAGAAAAATGTACCCAATCTTCTGATATTTCTTCTGTAAAGTCTTCGTGGGAAAACATAAAGAAACGGGGTCTTGTTCAAGTTCATGAACATCATTCTGAAATGTTAATTGAGTCACATGGAGAATTCAACCAAAATGGACTGAATTACTATTTAATTTATTATGATGATCCCTGTCTTCCGATTAATGGATCGCCAATAAAATTATTTTCTGTCAGAGCTATTGAAGAATTTATGACAAAACTTCATAAAGCTGC TTTCAATTATGCCATGTAGGCCTACCTATTGGTATTCGn ] [+] EMBL AI740403 [ TAAAGCTGCATTGCAATTATGCCATGTAGGCCTACCTATTGGTATTCGCCCCATAATATATGATAATAATAGTAATACTACTACTAATAATAACACCAATACTACTGATAGCGAAATAAAACTTGACCCAAATCCAGATCT ATTCAATGCATCAAAGTTAATATCAC CATCATCATCATCATCAACATCACCTACAACGAAGAAACAATTTAGTGGTATACNACTCA ATTCTTATTTCTTCACTGATCGTCATCCTTCAGAATTGGGTCNCAATTACATTGATTCAACTGCAGCCGCCTTATCCTAGTAATAGCACCTCCTTTCTTTTGTTTATTTTTTTGCTCTGTTTAACTGTAGACTCTTCTCTTTTTTTTCTAGTGAAAGAAATATNGTTTACTTtca ] [+] EMBL AI026171 [ TAAAGCTGCATTGCAATTATGCCATGTAGGCCTACCTATTGGTATTCGCCCCATAATATATGATAATAATAGTAATACTACTACTAATAATAACACCAATACTACTGATAGCGAAATAAAACTTGACCCAAATCCAGATCTAAACCAATGCATCAAAGTTAATATCAC CATCATCATCATCATCAACATCACCTACAACGAAGAAACAATTTAGTGGTTTTGCCCACATATTCTTATTTCTTCACTGATCGTCATCCTTCAGAATTGCATAACAATTACATTGATTCAACTGCAGCCGCCTTATCCTAGTAATAGCACCCTCTTTCTTTTGTTTATTTTTTTGCTCTGTTTAACTGTAGACTCTTCTC TTTTTTTCTAGTGAAAGAAATAT GTTTACTTCACTATTCCTTCCTGTTTTTTTTTCAAGTATTTATGAATAAGACAGATGAATTGGTATGTTTATTACTACTGCTGCCACCACCACTAAGGGGGGTA CTTTTCcagccc ] [-] EMBL CD073714 [ CTTCACTGATCGTCATCCTTCAGAATTGAATAACAATTACATTGATTCAACTGCAGCCGCCTTATCCTAGTAATAGCAATTCCTTTCTTTTGTTTATTTTTTTGCTCTGTTTAACTGTAGACTCTTCTC TTTTTTTCTAGTGAAAGAAATAT GTTTACTTCACTATTCCTTCCTG TTTTTTTTCAAGTATTTATGAATAAGACAGATG GTTGGTATGTTTATTACTACTGCTGCCACCACCACTAAGGAGAGTACCTTTTCATGCTCTCAATAAAAAGAACTTTCGCTTTATTTTTAAACATACATACTGATTATACACTTTGAAATGTGACTTTGATGAAAAACATTTGTAATCTTGTGATTGAAGCATATTTGGGATAGTCCCTATGTAGTGTTTGTTTTGTCATTTAGATCTACTCACATTATGTCTACTCAATTGTATCTAGACACAGAAATAGTTAGATGAATATATGTATACATTGATATATATATATATATATATCAATGTATATATGTAGAGAGCTAACATCAATGTATTCACTTTTCATGTTGCTTTTCTTTGTATATGCATATTCTGTATATTATTTATTTATATAAAAATGTAAGTACAATTGTGTATAGTGATTAATATAAGAAGTTA] [+] EMBL CD090446 [ TTCACTGATCGTCATGCTTCAGAAATGAATAACAATTACATTGATTCAACTGCAGCCGCCTTATCCTAGTAATAGCAATTCCTTTCTTTTGTTTATTTTTTTGCTCTGTTTAACTGTAGACTCTTCTC TTTTTTTCTAGTGAAAGAAATAT GTTTACTTCACTATTCCTTCCTG TTTTTTTTCAAGTATTTATGAATAAGACAGATG GTTGGTATGTTTATTACTACTGCTGCCACCACCACTAAGGAGAGTACCTTTTCATGCTCTCAATAAAAAGAACTTTCGCTTTATTTTTAGACATACATACTGATTATACACTTTGAAATGTGACTTTGATGAATAACATTTG ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||