These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1083 fasta sequence [CAGCCAANAATTTGGCACGAGGGCCTCAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTACAGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTTCATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCTACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATTCGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAATAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG] [+] EMBL CD081098 [CAGCCAANAATTTGGCACGAGGGCCTCAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTTACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTNTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGA ] [-] EMBL CD196370 [ GTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAA ] [+] EMBL CD136998 [ atCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTT ] [+] EMBL CD133852 [ TGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTNTTTACAGACACAT ] [-] EMBL CD073653 [ CATGG TCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTACAGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTTCATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCTACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATTCGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAATAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG] [-] EMBL CD074921 [ GCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTTACTACTTCATACTAAACCACGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTATGTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGTGCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTACAGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTTCATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCTACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATTCGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAATAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG] consensusID : consensus_9139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence [TGTACTGTGTTCAAGCTTTTTGGATTCCAGTACTTTGGCAGTTGGTACACATGATCGAAATGTCTATCTATTGGATATACGTTCGTTTGAACAAAATTCATCAAGTCGTATGTGCCATAAAAAGGCTGTTCTTTGCATAGATGCTATATATGAAAATGGTTTGCGTTCAGCTGTTTCAAGAAACTGTACTTCTACTATGAAAAACTGTATTAACGGTAGCGGTGATAACTGTGACCAGACATGTGTAGAATATGATTATCATTCAGAGTTATCATCTGTAACAGCAAGTGAAGAAAATTTTGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACCTAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTNTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGNGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATA] [+] EMBL CD185827 [TGTACTGTGTTCAAGCTTTTTGGATTCCAGTACTTTGGCAGTTGGTACACATGATCGAAATGTCTATCTATTGGATATACGTTCGTTTGAACAAAATTCATCAAGTCGTATGTGCCATAAAAAGGCTGTTCTTTGCATAGATGCTATATATGAAAATGGTTTGCGTTCAGCTGTTTCAAGAAACTGTACTTCTACTATGAAAAACTGTATTAACGGTAGCGGTGATAACTGTGACCAGACATGTGTAGAATATGATTATCATTCAGAGTTATCATCTGTAACAGCAAGTGAAGAAAATTTTGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACCTAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTNTCTCAACCGGTTCACAAACACAAGC ] [+] EMBL CD079376 [ GAAAATTTTGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACCTAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGGATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTAACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATGTTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGGATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCAAAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTGGCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCATATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTGCTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGNGAATGGCTCAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9139#0 ------------------------------------------------------------ consensus_9139#1 TGTACTGTGTTCAAGCTTTTTGGATTCCAGTACTTTGGCAGTTGGTACACATGATCGAAA 60 consensus_9139#0 ------------------------------------------------------------ consensus_9139#1 TGTCTATCTATTGGATATACGTTCGTTTGAACAAAATTCATCAAGTCGTATGTGCCATAA 120 consensus_9139#0 ------------------------------------------------------------ consensus_9139#1 AAAGGCTGTTCTTTGCATAGATGCTATATATGAAAATGGTTTGCGTTCAGCTGTTTCAAG 180 consensus_9139#0 ------------------------------------------------------------ consensus_9139#1 AAACTGTACTTCTACTATGAAAAACTGTATTAACGGTAGCGGTGATAACTGTGACCAGAC 240 consensus_9139#0 ------------------------------------------------------------ consensus_9139#1 ATGTGTAGAATATGATTATCATTCAGAGTTATCATCTGTAACAGCAAGTGAAGAAAATTT 300 consensus_9139#0 ---------------------------------CAGCCAANAATTTGGCA--CGAGGGCC 25 consensus_9139#1 TGGAGACTGTATGATTGATCCGTTTGAAATGGAAAGTATTGTACTGAACAGTCGTGAACC 360 ** * * ** ** * ** consensus_9139#0 TCAGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGG 85 consensus_9139#1 T-AGTCCTGTATCATTTCCCGTAAAGTGTAATTCAGACAAAATAAGTTGTGACAAACTGG 419 * ********************************************************** consensus_9139#0 ATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTA 145 consensus_9139#1 ATATACAAAATAATTCACTACCTGCTGACCTAAACCATTCGCCAAAACAATCATTTTCTA 479 ************************************************************ consensus_9139#0 ACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATG 205 consensus_9139#1 ACGTTCATCTAATCACTGGCAGCAGTGATCAGTATATTGCTGGTTGGGATGTGAGAAATG 539 ************************************************************ consensus_9139#0 TTTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGG 265 consensus_9139#1 TNTCTCAACCGGTTCACAAACACAAGCTCAGCCGTTACCCAAGAAAGCTGTCTCTCCTGG 599 * ********************************************************** consensus_9139#0 ATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCA 325 consensus_9139#1 ATAAATATGAATTATGGGTTGCTGAACCACCGAATCGGATTCACGTGTTCGACATTCGCA 659 ************************************************************ consensus_9139#0 AAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTG 385 consensus_9139#1 AAAATCAGTTCAACTGTGTATATACTAACCAACTTTCTGGATGGAATCGTGGTTTCGGTG 719 ************************************************************ consensus_9139#0 GCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCAT 445 consensus_9139#1 GCCTAAAGGCTACACTAGGATGTATATTCGCTGCTGGTTTGCATGGTTCTGTGGAAGCAT 779 ************************************************************ consensus_9139#0 ATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTG 505 consensus_9139#1 ATCATCCAACAAATCCACTGAAGCCATTGAGTAAACGACCTCTGGCTGAGAAAATTAGTG 839 ************************************************************ consensus_9139#0 CTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGGGAATGGCT 565 consensus_9139#1 CTCTTCCTACAAGTCTGGAATATCATAATGATGTTTTGGTGGTTGGTTCTGNGAATGGCT 899 *************************************************** ******** consensus_9139#0 CAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATACTAAACCA 625 consensus_9139#1 CAATTTATGTTTGGTCTTCTGTAGATAGAATCAATTCACTGACTACTTCATA-------- 951 **************************************************** consensus_9139#0 CGAATGATAACGTTACTCGATCAACGCTTTTTTCTCTTGAGAACTATATATCATTTTTAT 685 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 GTTGAAGAATTTTTAGTGTTTTTATCTTTCGTATGCTAATATGAATTTGAGTTTAGTTGT 745 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 GCAGTAGCATGAGGTGATTTGAACTTTTTTTATGGTAAGCACTTTGAGTTAATTTTTTAC 805 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 AGACACATGCAATTTAGAACAACATATATAAGCGAACAATATTGTTTTTGACTAGATCTT 865 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 CATCAGGCTTTAATATACAGTAATATTTGTATGTATATATGAAATTATTATCGTGTTCCT 925 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 ACTAGTTTTCCTTATGGGGTTCGATCTCATCTTTTACACATAGCAGGAGTTACAGGAATT 985 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 CGAGCTAGCAATCCAAGTCTTTGTATTTGTAAGAATTTTGTTCGTATATTTGTGTTTTAA 1045 consensus_9139#1 ------------------------------------------------------------ consensus_9139#0 TAATTAAACTTATCAAGAAGCTTGTAATAAAAATTCTG 1083 consensus_9139#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||