cluster # 9141

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Schistosoma mansoni
cluster # 9141 cluster # 9141 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9141#0 length = 1048 sequences # 7

consensus_9141#1 length = 333 sequences # 1

consensusID : consensus_9141#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1048
fasta sequence

                              [GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATTTATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAATAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTAGAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAATATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATTTATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATCAACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTGTACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGGATAGTGACTACTGAGACGAGATATGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGCGTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAGGCAT-AACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCCAATTCTGTAGCGTCGTGCTCGTACGGCG]

[-] EMBL CD181994             [GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATTTATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAATAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTAGAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAATATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATTTATATAACTGAAGTTTATGTGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD169286             [                                                                                                                                                                                        ATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAATATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATCCGAATTTATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATCAACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTGTACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGGATAGTGACTACTGAGACGAGATATGCGGAGTCGTATACATTTTCGGTCATGAAGCCTAGAGTGGTTTGTGTAGTTAGAGGGATAGGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAGGCGTGATAAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGAATGTGACGAACAAGAGTGTATCTat                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD063044             [                                                                                                                                                                                                                                TGAAGAACAGTGAAATATGTTCTGATAAGCCACAGTAGAGTAAATAGAGTCGCTTAGCGATGAGTGTATTCGAATTTACATAACTGAAGTTTATGTGGGATAAGAAAGAGTCCAGCCGTAGGATGATGACTGCATCAACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD201744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTGACTGCTGAGACGAGATTTGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGCGTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAGGCAT AACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCCAATTCTGTAGCGTCGTGCTCGTACGGCG]
[+] EMBL CD149579             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGGAGTCGTATTCCTGGTTGGTCATGAAACCTACCGTGGTTTGTGTATTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGCATTAAGGCAT AACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGATACTGACTTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTATCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCTGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAG                                                                                                                                                                                             ]
[+] EMBL CD195361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTAC                                                                               ]
[+] EMBL CD092177             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTACCGATGAGGTGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCCAATTCTGTAGCGTCGTGCTCGTACG   ]




>consensus_9141#0
GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATT
TATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAA
TAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTA
GAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAAT
ATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATT
TATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATC
AACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTG
TACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGG
ATAGTGACTACTGAGACGAGATATGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGC
GTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAG
GCATAACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGAT
GTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTA
CAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGAT
GATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATC
GGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCG
TGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATT
GCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCC
AATTCTGTAGCGTCGTGCTCGTACGGCG

consensusID : consensus_9141#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTAAACTCTATGTTCTGGTGTACAGTGCAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGATGATGCAGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAATCGGCTGGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATCGTGAAACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG]

[-] EMBL CD132163             [GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTAAACTCTATGTTCTGGTGTACAGTGCAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGATGATGCAGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAATCGGCTGGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATCGTGAAACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG]




>consensus_9141#1
GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAATGT
GACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTAAACTCTATGTTCTGGTGTACAGTG
CAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGATGATGC
AGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAATCGGCT
GGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATCGTGAA
ACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9141#0      GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATT 60
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      TATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAA 120
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      TAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTA 180
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      GAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAAT 240
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      ATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATT 300
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      TATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATC 360
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      AACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTG 420
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      TACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGG 480
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      ATAGTGACTACTGAGACGAGATATGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGC 540
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      GTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAG 600
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      GCATAACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGAT 660
consensus_9141#1      --GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAAT 58
                         *   **** ********************* **** ****************** **

consensus_9141#0      GTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTA 720
consensus_9141#1      GTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTC---TAAACTCTATGTTCTGGTGTA 115
                      ************************************   *********************

consensus_9141#0      CAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGAT 780
consensus_9141#1      CAGTGCAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGAT 175
                      ********** ******************* *****************************

consensus_9141#0      GAT-CAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAAT 839
consensus_9141#1      GATGCAGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAAT 235
                      *** ******************** ******************************* ***

consensus_9141#0      CGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATC 899
consensus_9141#1      CGGCTGGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATC 295
                      ************ ***** ************** ************** ** ********

consensus_9141#0      GTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGAT 959
consensus_9141#1      GTGAAACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG---------------------- 333
                      ******* * ****** ******* **  * *** ***                      

consensus_9141#0      TGCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATC 1019
consensus_9141#1      ------------------------------------------------------------
                                                                                  

consensus_9141#0      CAATTCTGTAGCGTCGTGCTCGTACGGCG 1048
consensus_9141#1      -----------------------------