These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1048 fasta sequence [GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATTTATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAATAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTAGAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAATATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATTTATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATCAACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTGTACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGGATAGTGACTACTGAGACGAGATATGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGCGTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAGGCAT-AACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCCAATTCTGTAGCGTCGTGCTCGTACGGCG] [-] EMBL CD181994 [GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATTTATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAATAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTAGAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAATATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATTTATATAACTGAAGTTTATGTGGGA ] [-] EMBL CD169286 [ ATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAATATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATCCGAATTTATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATCAACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTGTACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGGATAGTGACTACTGAGACGAGATATGCGGAGTCGTATACATTTTCGGTCATGAAGCCTAGAGTGGTTTGTGTAGTTAGAGGGATAGGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAGGCGTGATAAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGAATGTGACGAACAAGAGTGTATCTat ] [+] EMBL CD063044 [ TGAAGAACAGTGAAATATGTTCTGATAAGCCACAGTAGAGTAAATAGAGTCGCTTAGCGATGAGTGTATTCGAATTTACATAACTGAAGTTTATGTGGGATAAGAAAGAGTCCAGCCGTAGGATGATGACTGCATCAACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATA ] [+] EMBL CD201744 [ AGTGACTGCTGAGACGAGATTTGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGCGTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAGGCAT AACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCCAATTCTGTAGCGTCGTGCTCGTACGGCG] [+] EMBL CD149579 [ CGGAGTCGTATTCCTGGTTGGTCATGAAACCTACCGTGGTTTGTGTATTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGCATTAAGGCAT AACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGATACTGACTTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTATCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCTGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAG ] [+] EMBL CD195361 [ TTGGATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTACAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGATGATCAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAATCGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTAC ] [+] EMBL CD092177 [ ATTAAAGTATGGATCATCGTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGATTGCTGAGTACCGATGAGGTGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATCCAATTCTGTAGCGTCGTGCTCGTACG ] consensusID : consensus_9141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTAAACTCTATGTTCTGGTGTACAGTGCAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGATGATGCAGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAATCGGCTGGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATCGTGAAACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG] [-] EMBL CD132163 [GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAATGTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTAAACTCTATGTTCTGGTGTACAGTGCAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGATGATGCAGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAATCGGCTGGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATCGTGAAACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9141#0 GAATGTTTAGCCTGTGATCATGAGCAAATTAGTAAGCGTACGAAAAATTTAACATGCATT 60 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 TATGTCGTGACTGGATGAAAAATAACAGGTTCGTATGAGCGATTCGAAATATCGTGAAAA 120 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 TAGAGTAATACACTGTTTTTGGGTACGACAGCGGAATAGATCGAGGAAATAGGTGAGGTA 180 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 GAATATAATAGAAATTGGTATGTAGTGCCGATTGAATATGAGGATGAAGAACGGTGAAAT 240 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 ATGTTCTGATAACCCGCAGTAGAGTAAATAGAGTCGCTTAGCGATGAGCGTATTCGAATT 300 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 TATATAACTGAAGTTTATGTGGGATAAGAAATAATCCAACCGTAGGACGATGACTGCATC 360 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 AACAGGTGGTATTCATTGCTGTACTGCAATTGATTATGATAATAAAATGCGAAGTCAGTG 420 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 TACGTTGTCGTTTGCGTTAAGTTGTTAAATACGTATTAGTAGAATGACCAGAGGGACAGG 480 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 ATAGTGACTACTGAGACGAGATATGCGGAGTCGTATTCCTTTTTGGTCATGAAGCCTAGC 540 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 GTGGTTTGTGTAGTCAGAGGGATATGCGCTCAACCTCGTTTGTTACGAAACCGTATTAAG 600 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 GCATAACAAAAATACCAATACATATGATTATCGATGACGGCGAGTGAGACTGACTTGGAT 660 consensus_9141#1 --GTGGTAAAAGTACCAATACATATGATTATCGTTGACAGCGAGTGAGACTGACTTGAAT 58 * **** ********************* **** ****************** ** consensus_9141#0 GTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTCTTCTAAACTCTATGTTCTGGTGTA 720 consensus_9141#1 GTGACGAACAAGAGTGTATCTTTGAGAGACTAGCTC---TAAACTCTATGTTCTGGTGTA 115 ************************************ ********************* consensus_9141#0 CAGTGCAATGGGAATAGAAAATTAATAGCAGTAATCGAATAGTATTTATGGGTAACGGAT 780 consensus_9141#1 CAGTGCAATGAGAATAGAAAATTAATAGCAATAATCGAATAGTATTTATGGGTAACGGAT 175 ********** ******************* ***************************** consensus_9141#0 GAT-CAGCATTCAGTTATACATGTAAATGAATAGATAATATGAACATAATCATTACAAAT 839 consensus_9141#1 GATGCAGCATTCAGTTATACATGTGAATGAATAGATAATATGAACATAATCATTACTAAT 235 *** ******************** ******************************* *** consensus_9141#0 CGGCTGGTAATGCGGCGTAGAATACTTGATTTGCGTATAGACATTAAAGTATGGATCATC 899 consensus_9141#1 CGGCTGGTAATGAGGCGTCGAATACTTGATTTGTGTATAGACATTAAACTAGGGATCATC 295 ************ ***** ************** ************** ** ******** consensus_9141#0 GTGAAACCAAAATTGCTGAAGTTCAGTTAAAGTTGTCGCTGAAATGTAGGAAACGACGAT 959 consensus_9141#1 GTGAAACAAGAATTGCGGAAGTTCGGTCTAGGTTTTCG---------------------- 333 ******* * ****** ******* ** * *** *** consensus_9141#0 TGCTGAGTACCGATGAGATGAATGAACATTAGTTGCGTCGTGCTCGTACGGCGAGGTATC 1019 consensus_9141#1 ------------------------------------------------------------ consensus_9141#0 CAATTCTGTAGCGTCGTGCTCGTACGGCG 1048 consensus_9141#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||