cluster # 9157

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9157 cluster # 9157 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9157#0 length = 470 sequences # 7

consensus_9157#1 length = 231 sequences # 1

consensusID : consensus_9157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 470
fasta sequence

                              [ACGAGNAAACTTTNCATATTAGCTATTACTTCTAATTCATAAATGGCTGAATTAGTAG-GAACATGGAAATATCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCTAATGATGTATTTAATGTTATCAAT-AAAATGAAATCAAA-TATGATCATAGATTTGGATGATAATGA-AGTACGCATAAAAATGATAATAGGTGATGAAGAACTGGATCAATCCTTTGAATTGGGTCAAGAAGTGGANGAATTAACATTGGATGGACGAATAGNTCGNGCTATTGTAACCATTGAATCAGACAAGAAAATGGTACATGTACAAAGGACATGGCTTTACAGAAACTGTCAATACACGTGAAGTTGATGGAGACACATTGATAACAACAATAAAATCTCAGCAGCATATAGCAACTATCAAATATCAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCC]

[+] EMBL SM294                [ACGAGNAAACTTTNCATATTAGCTATTACTNCTAATTCATAAATGGCTGAATTAGTAG GAACATGGAAATATCTTGAAAGTNCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCTAATGATGTATTTAATGTTATCAAT AAAATGAAATCAAA TATGATCATAGATTTGGATGATAATGA AGTNCGCATAAAAATGATAATAGGTGATGAAGAACTGGATCAATCCTTNGAATTGGGTCAAGAAGTGGANGAATTAACATTGGATGGACGAATAGNTCGNGCTATTGTAACCATTGAATCAGACAAGAAAATGGTACATGTACAAAGGACATGGCTTTACAGAAACTGTCAATACACGTGAAGT                                                                                                     ]
[+] EMBL CD077747             [      AAACTTTTCATATTAGCTATTACTTCTAATTCATAAATGGCTGAATTAGTAG GAACATGGAAATATCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCTAATGATGTATTTAATGTTATCAAT AAAATGAAATCAAA TATGATCATAGATTTGGATGATAATGA AGTACGCATAAAAATGATAATAGGTGATGAAGAACTGGATCAATCCTTTGAATTGGGT                                                                                                                                                                                                                                   ]
[+] EMBL AW017372             [                          TACTTCTAATTCATAAATGGCTGAATTAGTAG GAACATGGAAATATCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCTAATGATGTATTTAATGTTATCAAT AAAATGAAATCAAA TATGATCATAGATTTGGATGATAATGA AGTACGCATAAAAATGATAATAGGTGATGAAGAACTGGATCAATCCTTTGAATTGGGTCAAGAAGTTGAAGAATTAACATTTGATGGACGAATAGTTCGAGCTATTGTAACCATTGAATCAGACAAGAAAATGGTACATGTACAAA GACATGGCTTTACAGAAACTGTCATTACACGTGAAGTTGATGGAGACACATTGATAACAACAATAAAATCTCAGCAGCATATAGCAACTATCAAATATCAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCC]
[+] EMBL SM687                [                                    TCATAAATGGCTGANTTAGTAGTGAACATGGAAATATCTTGAAAGTTCCAACGNGGAAGAATTGTCTAGTGANTTAGGAACTCCTAATGATGTATTTAATGTTATCAAT AAAATGAAATCAAANTATGATCATAGATTTGGATGATAATGACCGTACGCATA                                                                                                                                                                                                                                                                                   ]
[+] EMBL SMAA98640            [                                                             ACATGGAAAT TCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCTAATGATGTATTTAATGTTATCAATAAAAATGAAATCAAA TATGATCA                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL SMAA98639            [                                                             ACATGGAAAT TCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCTAATGATGTATTTAATGTTATCAATAAAAATGAAATCAAA TATGATCA                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AA952770             [                                                             ACATGGAAAT TCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGGACTCCTAATGATGTATTTAATGTTATCAATAAAAATGAAATCAAA TATGATCA                                                                                                                                                                                                                                                                                                                 ]




>consensus_9157#0
ACGAGNAAACTTTNCATATTAGCTATTACTTCTAATTCATAAATGGCTGAATTAGTAGGA
ACATGGAAATATCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCT
AATGATGTATTTAATGTTATCAATAAAATGAAATCAAATATGATCATAGATTTGGATGAT
AATGAAGTACGCATAAAAATGATAATAGGTGATGAAGAACTGGATCAATCCTTTGAATTG
GGTCAAGAAGTGGANGAATTAACATTGGATGGACGAATAGNTCGNGCTATTGTAACCATT
GAATCAGACAAGAAAATGGTACATGTACAAAGGACATGGCTTTACAGAAACTGTCAATAC
ACGTGAAGTTGATGGAGACACATTGATAACAACAATAAAATCTCAGCAGCATATAGCAAC
TATCAAATATCAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCC

consensusID : consensus_9157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [CCGGCCGAAGTCTGGATAACAACAATAAAATCTCAGCAGCATATAGCAACTATCAAATATCAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCCACTATTTAGTACTTCAAATAAATAAACATATAATATTATCCTACCGTTTATTTATATTACTTATTGGTTACAATGAAATTGTTTATTTATACCCTTACCATAACTATACTCAGATAGATATATACACTTTG]

[+] EMBL AI395847             [CCGGCCGAAGTCTGGATAACAACAATAAAATCTCAGCAGCATATAGCAACTATCAAATATCAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCCACTATTTAGTACTTCAAATAAATAAACATATAATATTATCCTACCGTTTATTTATATTACTTATTGGTTACAATGAAATTGTTTATTTATACCCTTACCATAACTATACTCAGATAGATATATACACTTTG]




>consensus_9157#1
CCGGCCGAAGTCTGGATAACAACAATAAAATCTCAGCAGCATATAGCAACTATCAAATAT
CAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCCACTATTTAGTACTTCAAATA
AATAAACATATAATATTATCCTACCGTTTATTTATATTACTTATTGGTTACAATGAAATT
GTTTATTTATACCCTTACCATAACTATACTCAGATAGATATATACACTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9157#0      ACGAGNAAACTTTNCATATTAGCTATTACTTCTAATTCATAAATGGCTGAATTAGTAGGA 60
consensus_9157#1      CCGGCCGAAGTCTGGATAACAACAATAAAATCTCAGCAGCATATAGC--AACTATCA--A 56
                       **    ** * *  ***  * * ** *  *** *     * ** **  ** **  *  *

consensus_9157#0      ACATGGAAATATCTTGAAAGTTCCAACGTGGAAGAATTGTCTAGTGAATTAGGAACTCCT 120
consensus_9157#1      ATATCAACGTGTTT----------GACGTG-----ATCAT-TAGTAAATGTTCAACTTCC 100
                      * **  *  * * *           *****     **  * **** ***    **** * 

consensus_9157#0      AATGATGTATTTAATGTTATCAATAAAATGAAATCAAATATGATCATAGATTTGGATGAT 180
consensus_9157#1      ACT-----ATTTAGTACTTCAAATAAATAAACATATAATATTATCCTACCGTTTATTTAT 155
                      * *     ***** *  *   ******   * **  ***** *** **   **   * **

consensus_9157#0      AATGAAGTACGCATAAAAATGATAATAGGTGATGAAGAACTGGATCAATCCTTTGAATTG 240
consensus_9157#1      ATT-ACTTATTGGTTACAATGA-AATTGTTTATTTATACCCTTACCATAACTAT-ACTCA 212
                      * * *  **    * * ***** *** * * **  * * *   * **   ** * * *  

consensus_9157#0      GGTCAAGAAGTGGANGAATTAACATTGGATGGACGAATAGNTCGNGCTATTGTAACCATT 300
consensus_9157#1      GAT--AGATATATACACTTTG--------------------------------------- 231
                      * *  ***  *  *    **                                        

consensus_9157#0      GAATCAGACAAGAAAATGGTACATGTACAAAGGACATGGCTTTACAGAAACTGTCAATAC 360
consensus_9157#1      ------------------------------------------------------------
                                                                                  

consensus_9157#0      ACGTGAAGTTGATGGAGACACATTGATAACAACAATAAAATCTCAGCAGCATATAGCAAC 420
consensus_9157#1      ------------------------------------------------------------
                                                                                  

consensus_9157#0      TATCAAATATCAACGTGTTTGACGTGATCATTAGTAAATGTTCAACTTCC 470
consensus_9157#1      --------------------------------------------------