These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 719 fasta sequence [ACTTCTGAAGGAATGTTCACATGGATATTGCCTTCGAATTGGCTTGT-GAAGCACTGAGATGTAATGAAGTCCCAGTA-GGGTGTGCTTTTGTTTAT-AAT-GGAGAAGTAATTGCATCT-GGTCGCAACG-AAGTG-AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT-AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT-CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT-CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTT-CTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCG-AAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGGCATCGACTCTTTG-AAATAAATGGAAATAATCGTGAAGGTCTTTCTTTTTATGTTGATGAAAGCGCATTGATTTCATTTTTCACCTCCACTTATCTTATGATTAAACTTTACGCCCAAACCTCATGTTATTTTTGACTTGTTCCAAAACCACCTATAATGGAAAATTAAA] [-] EMBL CD202907 [ACTTCTGAAGGAATGTTCACATGGATATTGCCTTCGAATTGGCTTGT GAAGCACTGAGATGTAATGAAGTCCCAGTA GGGTGTGCTTTTGTTTAT AAT GGAGAAGTAATTGCATCT GGTCGCAACG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTC ] [+] EMBL CD078666 [ TGGATATTGCCTTCGAATTGGCTTGT GAAGCACTGAGATGTAATGAAGTCCCAGTA GGGTGTGCTTTTGTTTAT AAT GGAGAAGTAATTGCATCT GGTCGCAACG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTT CTATGCACAAGAAAACGAANATGCTCCTGAAGAACTTCG AAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGGCATCGACTCTTTG AAATAAATGGAAATAATCGTGAAGGTCTTTCTTTTTATGTTGATGAAAGCGCATTGATTTCATTTTTCACCTCCACTTATCTTATGATTAAACTTTACGCCCAAACCTCATGTTATTTTTGACTTGTTCCAAAACCACCTATAATGGAAAATTAAA] [+] EMBL AA999576 [ GGCTTGTGGAAGCACTGAGATGTAATGAAGTCCCAGTAGGGGTGTGCTTTTGTTTAT AATGGGAGAAGTAATTGCATCTGGGTCGCAACG AAGTGAAATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCG ] [-] EMBL SM7341 [ gn GAAGCCCTGAGATGTANTG AGTCCCAGTA GGGTGTGCTTTTGTTNATCAAT GGAGAAGTAATTGCATCT GCCCCCACCGAAAGTG AATCCAACTAGAGATGCTACTCCACATGCCGAGATGNTGCCAATTAAGNCGACTAGAACAGTGTTGTCGAAATAACCCAAAAGAACTTGACAAGATTNTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGTNCTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGNTCAGTCCTAAGTGTACACAATTNCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTNCTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCGAAAAACNCAAGCG ] [-] EMBL AI976255 [ TCCCAGTA GGGTGTGCTTTTGTTTAT AAT GGAGAAGTAATTGCATCT GGTCGCAACG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAAAAGTT CTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCG AAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAA ] [-] EMBL CD194031 [ TGCATCT GGTCGCANCG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATANCCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGCTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTT CTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCG AAAACGCAAGCGTG ] [+] EMBL CD149492 [ ACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAATCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACT ] consensusID : consensus_9165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [TTTTGTCTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTTTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAATAATCGTTGAAGTTGCTTTCTTTTTCATGTTGATGGAAGTCGCATTGATTTTCATTTTTTCACCCTCCAACTTACTCTATATGTATTAAACTTTATCGTACCAAACACTACATGTTTATTTTCTGATCTTGTTTCCAGATAAATCTAACCTATTAAGTTGAAAATATTATAAAACT] [-] EMBL CD073129 [TTTTGTCTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTTTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAATAATCGTTGAAGTTGCTTTCTTTTTCATGTTGATGGAAGTCGCATTGATTTTCATTTTTTCACCCTCCAACTTACTCTATATGTATTAAACTTTATCGTACCAAACACTACATGTTTATTTTCTGATCTTGTTTCCAGATAAATCTAACCTATTAAGTTGAAAATATTATAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9165#0 ACTTCTGAAGGAATGTTCACATGGATATTGCCTTCGAATTGGCTTGTGAAGCACTGAGAT 60 consensus_9165#1 ------------------------------------------------------------ consensus_9165#0 GTAATGAAGTCCCAGTAGGGTGTGCTTTTGTTTATAATGGAGAAGTAATTGCATCTGGTC 120 consensus_9165#1 ------------------------------------------------------------ consensus_9165#0 GCAACGAAGTGAATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATTAGAC 180 consensus_9165#1 ------------------------------------------------------------ consensus_9165#0 GACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTG 240 consensus_9165#1 ------------------------------------------------------------ consensus_9165#0 ACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGTCTTC 300 consensus_9165#1 --------------------------------------------------TTTTGTCTTC 10 ********** consensus_9165#0 CAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTT 360 consensus_9165#1 CAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTT 70 ************************************************************ consensus_9165#0 CAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAG 420 consensus_9165#1 CAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAG 130 ************************************************************ consensus_9165#0 TTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTCTATGCACAAGAAAACGAAAATG 480 consensus_9165#1 TTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTTTATGCACAAGAAAACGAAAATG 190 ************************************* ********************** consensus_9165#0 CTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATT 540 consensus_9165#1 CTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATT 250 ************************************************************ consensus_9165#0 TTTATTTTGGCATCGACTCTTTG-AAATAAATGGAAATAATCGTGAAGGT--CTTTCTTT 597 consensus_9165#1 TTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAATAATCGTTGAAGTTGCTTTCTTT 310 ********* ************* ******************** * ** ******** consensus_9165#0 TT-ATGTTGATGAAAG-CGCATTGATTTCA--TTTTTCACCTCC--ACTTATCTTATG-- 649 consensus_9165#1 TTCATGTTGATGGAAGTCGCATTGATTTTCATTTTTTCACCCTCCAACTTACTCTATATG 370 ** ********* *** *********** ********* * ***** *** consensus_9165#0 -ATTAAACTTTAC---GCCCAA-ACCTCATGTTA--TTTTTGA-CTTGTTCCAAAACCA- 700 consensus_9165#1 TATTAAACTTTATCGTACCAAACACTACATGTTTATTTTCTGATCTTGTTTCCAGATAAA 430 *********** ** ** ** ****** *** *** ****** * * * * consensus_9165#0 CCTATAATGGAAAATTAAA-------------- 719 consensus_9165#1 TCTAACCTATTAAGTTGAAAATATTATAAAACT 463 *** * ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||