cluster # 9166

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Schistosoma mansoni
cluster # 9166 cluster # 9166 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9166#0 length = 604 sequences # 3

consensus_9166#1 length = 492 sequences # 4
consensus_9166#2 length = 139 sequences # 1

consensusID : consensus_9166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 604
fasta sequence

                              [GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAAATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTCTTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTG]

[+] EMBL CD152245             [GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAAATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTCTTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTCATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAA                                                                                                                                              ]
[+] EMBL CD152332             [GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAAATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTCTTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAAACCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAG TGGCc                                                                                                                                                      ]
[-] EMBL CD152238             [                                                                                                                               TTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACCGTGCAAGTTTTATGCTGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAAGTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATTTATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTG]




>consensus_9166#0
GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAA
ATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTC
TTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGC
TGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAA
GTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCC
TCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATT
TATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTAC
GACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAAACGATGATCATGGTGACG
TTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTG
CTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTG
TCTG

consensusID : consensus_9166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 492
fasta sequence

                              [GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT-TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA]

[-] EMBL CD117215             [GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA]
[-] EMBL CD117243             [            GAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA]
[+] EMBL CD114450             [                                         AGTTTTCACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGTTGTTCTAAACCCGGGCTTGTACGACAGCATGACTCGAAACCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTGGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGTGTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACCAAATTTCACGCGCTAGGGGAATGCGTNCGct                                                                                                      ]
[+] EMBL CD118362             [                                                ACACGCTCCTCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCTTCAAAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTACGACAACATGACTCGAAACCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTGCTACTCCTGGT TTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCT                                                                                                                                                                                ]




>consensus_9166#1
GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCCTCT
AACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGCATAGCGTTGATCGCTG
TTCTAAACCCGGGCTTGTACGACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAG
AAACGATGATCATGGTGACGTTGATTACAGATTTGACCAGAATCTCCCACAAATGAATAT
ATCATCTGAAAAAGAACTTGCTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAAC
GCCGAATCTTTTTGCTCCTGTCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGA
AATTTCACGCGCTAGGGGAATGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCA
AACTGTGTATCCCAAAAATGACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACC
ATTTCAGTCTCA

consensusID : consensus_9166#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [TACTGTAATCAGACGTCGCCATGATCATCGTTTATGGGCCGGCCACTCATAAAGGGTTTCGAGTCATGTTGTCGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGATATTTTTTCTAACAAACAG]

[-] EMBL CD146928             [TACTGTAATCAGACGTCGCCATGATCATCGTTTATGGGCCGGCCACTCATAAAGGGTTTCGAGTCATGTTGTCGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGATATTTTTTCTAACAAACAG]




>consensus_9166#2
TACTGTAATCAGACGTCGCCATGATCATCGTTTATGGGCCGGCCACTCATAAAGGGTTTC
GAGTCATGTTGTCGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGA
TATTTTTTCTAACAAACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9166#0      GACAAAGTCATCTGAAGGCACTCGTAAGAGAAAAAAACGGAGGAAAGATGGTCCTCATAA 60
consensus_9166#1      ------------------------------------------------------------
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      ATCTGCTTCTCAATCTAGGTGTAAATATTATATGGATGGTCGTTGTAGCAAGGGGGGTTC 120
consensus_9166#1      ------------------------------------------------------------
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      TTGCCCATTTCTTCATGATTTTACACCAGCAAAGAAAAATGAACTGTGCAAGTTTTATGC 180
consensus_9166#1      ------------------------------------------------------------
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      TGTTGGTATGTGTTCCAAAGAGTCTGCGTGTTCGTTTTTACATGGTGAATTTCCGTGCAA 240
consensus_9166#1      ------------------------------------------------------------
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      GTTCTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCC 300
consensus_9166#1      ---GTTCCATCTGACGAATGATTGCCATCATGGTAGTGACTGCAAGTTTTCACACGCTCC 57
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      TCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAGGTTAGCTTAACATT 360
consensus_9166#1      TCTAACAGAATTCACACGCTCTTTGTTAGAAAAAATATCCTCAAAG-------------- 103
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      TATTGTCAACCAACTTTCATCAGCATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTAC 420
consensus_9166#1      -----------------------CATAGCGTTGATCGCTGTTCTAAACCCGGGCTTGTAC 140
consensus_9166#2      ----------------------------------------------TACTGTAATCAGAC 14
                                                                      * *   *   **

consensus_9166#0      GACAACATGACTCGAAACCCTTTATGAGTTGGCGTCCGAGAAACGATGATCATGGTGACG 480
consensus_9166#1      GACAACATGACTCGAAGCCCTTTATGAGTGGCCGTCCGAGAAACGATGATCATGGTGACG 200
consensus_9166#2      GTCGCCATGATC----ATCGTTTATGGGCCGGCCACTCATAAAGGGT--TTCGAGTCATG 68
                      * *  *****        * ****** *  * *  *  * *** * *  *    ** * *

consensus_9166#0      TTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTG 540
consensus_9166#1      TTGATTACAGATTTGACCAGAATCTCCCACAAATGAATATATCATCTGAAAAAGAACTTG 260
consensus_9166#2      TTGT---CGTACAAGCCCGGTGTTTAGAACAGCGCTCTACGATATGCTTTGAGGATATTT 125
                      ***    *  *   * ** *  * *   ***      **    **      * **  ** 

consensus_9166#0      CTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTG 600
consensus_9166#1      CTACTCCTGGTTTCAGCCCTCAACGTATGCCAGTTTTAACGCCGAATCTTTTTGCTCCTG 320
consensus_9166#2      TTTCTAACAAA--CAG-------------------------------------------- 139
                       * **        ***                                            

consensus_9166#0      TCTG-------------------------------------------------------- 604
consensus_9166#1      TCTGCACTCCTAGTCCTCGTCACTTCCGCCCAGAGCACGAAATTTCACGCGCTAGGGGAA 380
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      ------------------------------------------------------------
consensus_9166#1      TGCGTCCGTTCAATATGGTTCCTGGTGAGCAGATGCCTCAAACTGTGTATCCCAAAAATG 440
consensus_9166#2      ------------------------------------------------------------
                                                                                  

consensus_9166#0      ----------------------------------------------------
consensus_9166#1      ACCGGTGTTTCCCTTCACCGGTGCCTTACGGCTCTGTACCATTTCAGTCTCA 492
consensus_9166#2      ----------------------------------------------------